Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0474 ATGACCGagacaagaaaatacatgcagAACCCACTATTAGAGCTTGAAGAGATACTGCAAGAAGCAGAACATCGTTGGCTTCGACCTCCTGAAATATGTGAGATACTTCGCAATTATAAGAAGTTTCAGTTAACACCAGATCCACCTGTTAGGCCTCCAGCTGGATCACTATTCTTGTTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGgtggaggaagaaaaaagatggGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAAAACTTCCAACGGAGAAGTTATTGGATGCTTGACGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGCTGCATGTCTGGCACCTCAAATTTGCCTGTAGTTCCAGTAACCCTGGTTGGTAGTTCTCAAAATAGTTCAGTGCCTTCCTCTACCGAAATAAACTCACCAATATCTGTTGTTCAAACATCTTTCACATCAACTGCAAATAAAGTTGATCAGCATGGACGAGCCTCGGAGTACGAGGATGTTAACTCACAGAATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTCCATACTTCACAGTGCACCTTGGCTTACACATGAAGCCACTGgGTTTTCTGAGTTGTTGAGGAACCCCTTGATTTCATCATGGTCATCTTCTTTCCCTAGCTATTCTCCCGGTACTGGCTTGTCTCCCTGGACCTTAATTCAGAACTCTAggagaaacaaaattaatatgcaTGATGGAAAACATCATGTTGAAGGTTCTGAAGCTGACTTCACTGTTCATATGCTAAGCAATGCTGGGTTAGATGCTGTTCGTAGAATGCAAGATGGTGTAATTTTCAGAGACAGGCTCATCAATGACATGTATATCAAGCCAGTAAAAGGAGATTTGCCAACTGTTAATCAGgTGCAAAACGAGCATGATCTAGATTCATTTCGTGCTCAATCCCATGATCATATCCAATTGTTGCAACTACTACAATCGTTGTTGAACAAAAACTTCAAGATGGTGGTTCAGACAATGATGAATCAGAACAAGTTGAACCTGGGGAAATGA 1140 0.4 MTETRKYMQNPLLELEEILQEAEHRWLRPPEICEILRNYKKFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYREIKEGCMSGTSNLPVVPVTLVGSSQNSSVPSSTEINSPISVVQTSFTSTANKVDQHGRASEYEDVNSQNGPQASSHAQPISNSILHSAPWLTHEATGFSELLRNPLISSWSSSFPSYSPGTGLSPWTLIQNSRRNKINMHDGKHHVEGSEADFTVHMLSNAGLDAVRRMQDGVIFRDRLINDMYIKPVKGDLPTVNQVQNEHDLDSFRAQSHDHIQLLQLLQSLLNKNFKMVVQTMMNQNKLNLGK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0474 379 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 206 - -
Ssu6g0474 379 SMART CG_1_2 18 136 IPR005559 GO:0003677
Ssu6g0474 379 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Ssu6g0474 379 MobiDBLite consensus disorder prediction 195 211 - -
Ssu6g0474 379 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Ssu6g0474 379 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 206 - -
Ssu6g0474 379 MobiDBLite consensus disorder prediction 184 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0474 Ssu-Chr6 7388963 7393879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0474 1 172 CAMTA Transcription Factor Family AT5G64220 60.920 1.27e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0474 K21596 - gmx:100818336 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0474 6 7388963 7393879 Ssu6g0474 6 7388963 7393879 ECH