Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0473 ATGGCTTCAGATTCTGGTAATTATTGGAATACACTTGATGCTCATAATGAAGATAAGGAGGTATCTAGTTTACGCCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGAAGTAAAAAGCTCTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCCGAAGTTTTGGCGGATAATGTCATACGATGTCAGACTCCTTTGCATTCACCTGGTCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAgggaatttgaatttgatgaaAATCCAAGCAAATTTTTAGGTCCTGTGGGTATTAAAATCTCACCAGAAGATGAGGTACGGCTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTAACAATGAGTGGTTGAAGTGCTCTGTTTCTGAATGTGAAAAATGTAAACTAAAGGGAACAATGTATTCCATGAGAGATGATAATGAAGTATTTGAAGAAACTTTCCAGATTGATGGAATTGGTCATATAAACCCTAGAGATGTATTATGTCAGAGAATAATGAGAGACAAGCTTTATGAGTGGTTGATATATAAGGTTCATGAAGGAGGAAAAGGACCAAATGTGTTGGATGATGAAGGCCAAGGAGTAATGCATTTGGCAGCTGCACTTGGTTATGTGTGGGCCATGGCCCCATTAGTTGCTGCTGGTATTAGTCCTAACTTCAGAGACACTCGTGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGCTATTCAAATTAGGTGCAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCGAGGACAAACAGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGGCAGATTTGACTAATAAATTATCTGTATTGATTGTCAAGGAAAATGAGACTGGCAACATTACCACAACCATAGCAGCTGACAATGTTTTTCAGTCTGCTGAAGATGACCCATCTAATATGACAATGGATGAGCAACATTATCTCAAAGAGTCACTGAATGTGTTTCGAAAATCAGCTCGTGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGCGACAATTAGCCAAAAGTAGCAGTGATGTTTCTGAAGCAGTACTTGATGTAGTCGCTGATTCTTTGAGCAAGGTACAGAAGATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAGATATCGTGGatggaaaggaagaaaagattTTTTGAAGATATGTGACCGCATTGTAAAAATTCAGGCTCATATTAGAGGACACAAAGTTCGTAAGCAGTACAAAAAAGTTTTGTGGTCTGTTAGCATTGTGGAAAAGGCAATACTGCGCTGGAGGCGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCAGTTGGCATTGTGGCTAAAGATGCTGAGAAGGTTATGAGTATGAATTTCTTAGCATTGGGAGGAGACAGAAATCAGATGATGTAA 1659 0.4008 MASDSGNYWNTLDAHNEDKEVSSLRHMQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEFDENPSKFLGPVGIKISPEDEVRLQIRLLKLVDLGPNNEWLKCSVSECEKCKLKGTMYSMRDDNEVFEETFQIDGIGHINPRDVLCQRIMRDKLYEWLIYKVHEGGKGPNVLDDEGQGVMHLAAALGYVWAMAPLVAAGISPNFRDTRGRTGLHWASYFGREETVIVLFKLGAAPGAVEDPTSAFPRGQTAADLASSRGHKGIAGYLAEADLTNKLSVLIVKENETGNITTTIAADNVFQSAEDDPSNMTMDEQHYLKESLNVFRKSARAAASILAAFRARSFCQRQLAKSSSDVSEAVLDVVADSLSKVQKMGHFEDYLHFAALRIQKRYRGWKGRKDFLKICDRIVKIQAHIRGHKVRKQYKKVLWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIVAKDAEKVMSMNFLALGGDRNQMM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0473 552 SUPERFAMILY Ankyrin repeat 231 340 IPR036770 -
Ssu6g0473 552 Pfam IPT/TIG domain 46 123 IPR002909 -
Ssu6g0473 552 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 533 - -
Ssu6g0473 552 ProSiteProfiles IQ motif profile. 475 501 IPR000048 GO:0005515
Ssu6g0473 552 ProSiteProfiles Ankyrin repeat profile. 278 310 IPR002110 GO:0005515
Ssu6g0473 552 SUPERFAMILY E set domains 46 131 IPR014756 -
Ssu6g0473 552 SMART iq_5 472 494 IPR000048 GO:0005515
Ssu6g0473 552 SMART iq_5 449 471 IPR000048 GO:0005515
Ssu6g0473 552 Pfam IQ calmodulin-binding motif 453 470 IPR000048 GO:0005515
Ssu6g0473 552 Pfam IQ calmodulin-binding motif 477 494 IPR000048 GO:0005515
Ssu6g0473 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 501 IPR027417 -
Ssu6g0473 552 ProSiteProfiles IQ motif profile. 450 479 IPR000048 GO:0005515
Ssu6g0473 552 Gene3D - 448 497 - -
Ssu6g0473 552 CDD IPT 45 131 - -
Ssu6g0473 552 Gene3D - 217 366 IPR036770 -
Ssu6g0473 552 Gene3D Immunoglobulins 39 137 IPR013783 -
Ssu6g0473 552 SMART ANK_2a 278 307 IPR002110 GO:0005515
Ssu6g0473 552 SMART ANK_2a 317 347 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0473 Ssu-Chr6 7386362 7388897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0473 33 521 CAMTA Transcription Factor Family AT5G64220 45.110 2.21e-138 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0473 K21596 - gmx:100818336 982.63