Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0460 ATGATCGTGAGCCAGAAGATGGTGGCGGAAGCGGAAATTATCTGTCAGCAGAGCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTGGCGCAAGAACACAACGTTAAGGTTGAGGTTTCACCCACATCACCTTCACCTTCAGTTCCGATCTTTGGCCAAGCAGTGAGTTGCTCTGAGATCATTAAAGATTCCATTTTGGAGACCCCTGCGATGAATTTTATCCCCAATGTGCGTTCTGGTAGCTATGCTGAAATTGGACGACGGGATTCTATGGAAGATGAGCACATTTGTATTGATGATCTAGGGGTGCATCTTGGATTTGTGTTCAAGTACCCGATACCAAGTGCATTTTATGCAGTTTTTGATGGTCATGAAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCCATGAGATTGTTTTTTGAAGATGTGGACATGCTGCAGTCGTACGATACTGATGCGTTTTTTCTAAAGAAGTTGGAGGATTCCCATCGGAGAGCTTTTTTACGGGCAGATCTTGCCTTGGCTGATGAACAAACTGTTCGTAGTTCATGTGGGACTACTGCATTGACTGCCCTTGTACTCGGAAGGCATTTGCTTGTTGCTAATGCTGGTGATTGTCGAGCAGTTCTTTGCCGGAGAGGCGTGGCTGTTGAGATGTCTAATGATCACAAGCCAACCTATCTACCGGAGCGTAGGAGGGTGGAGGAGTTAGGTGGATTCATTGATGATGTATATCTCAATGGTGATCTTTCAGTAACCCGAGCCCTTGGGGATTGGCACTTGAAATTTCCACTCGGGGCTGCATCCCCTCTTATTGCTGAGCCAGATGTTCGATTGGTTACATTGACTGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGGTTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAATTAGTCAAGGAAGCTTTGCGGCTAAATACAACAGATAATGTCACTGTGATTGTTGTATATTTGTCGCCCATTGCAAGAATTGTTGAATCATGTCCGCCCCAAAGGCGGAGATTCAAAGCTTGCAGTCTGTCTGAAGAGGCCCGTAATAGATTGAAAAGCTTGATTGAGGGAAATTGA 1161 0.4556 MIVSQKMVAEAEIICQQSIPMLDVKYHICVAQEHNVKVEVSPTSPSPSVPIFGQAVSCSEIIKDSILETPAMNFIPNVRSGSYAEIGRRDSMEDEHICIDDLGVHLGFVFKYPIPSAFYAVFDGHEGPDAAAFVKRNAMRLFFEDVDMLQSYDTDAFFLKKLEDSHRRAFLRADLALADEQTVRSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHKPTYLPERRRVEELGGFIDDVYLNGDLSVTRALGDWHLKFPLGAASPLIAEPDVRLVTLTEDDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTTDNVTVIVVYLSPIARIVESCPPQRRRFKACSLSEEARNRLKSLIEGN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0460 386 Pfam Protein phosphatase 2C 86 342 IPR001932 -
Ssu6g0460 386 SMART PP2C_4 69 347 IPR001932 -
Ssu6g0460 386 SMART PP2C_SIG_2 104 349 IPR001932 -
Ssu6g0460 386 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 373 - -
Ssu6g0460 386 PANTHER PROTEIN PHOSPHATASE 2C 7 373 IPR015655 GO:0004722|GO:0006470
Ssu6g0460 386 CDD PP2Cc 78 349 IPR001932 -
Ssu6g0460 386 Gene3D - 68 352 IPR036457 -
Ssu6g0460 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Ssu6g0460 386 SUPERFAMILY PP2C-like 73 350 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0460 Ssu-Chr6 7180576 7182317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0460 1 385 PP2C-type Phosphatase Gene Family AT1G48040 56.608 8.73e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0460 K14803 - gmx:100781949 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0460 6 7180576 7182317 Ssu6g0460 6 7180576 7182317 ECH
Ssu6g0460 6 7180576 7182317 Ssu1g1181 1 25912984 25914829 PCT