Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0455 ATGGACGAAAAAGGAACAAGAATTAGCAACGCCCTTAGTGAGGAGGAGATGGACCTCCGAAGAGGCCCTTGGACCATCGATGAGGACCTCACTCTTATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCCGGCCTCAAACGAACGGGGAAGAGTTGCAGACTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAAGAACAACTTTTGATTCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCAAAAATTGCCCAATATTTACCAGGTAGAACCGACAATGAAATAAAGAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTAACGTGAATAGCAAGCAATTTAAGGACACCATACGTTACCTTTGGATGCCAAGGCTAGTAGAGCGCATTCAAGCAGCAGCGGCTGCTTCAGCCACCAAAACTgtcaccaccgccaccactgcTATCACCGCCACTACAACTGTTACCACCAACAATGCATACCCTTACGGGAACAACCTCAATAACAATTTTGAGGTTCATAATAACAGCAAAATGGGGTTGACTCCTTTGATTATGAACAATGACTTTGTGGGTTCGCAAAGTTACACACCAGAGAATAGTAGCATGGCTGCATCATCATCAGACTCGTTTGGGACTCAGGTCTCAACAATCTCTGATTTGGCTGATTATTACAGTGTCCCAGTTAGTAGTAACAATAATACTAACCTTGAGGATTACTATCAACCCTCTCAAATTAGTTACTCAGATTCCATTACAAGCCCATCTGGGTTGTTCTTTCAGGGATTGGATTTCCAATCCATGGATCCAAACACCTCGTGGAATATACAAAGTGAGGACTCATCCGAGATTTTTTGGAATGTTGAAAACATGTTGTTCCTAGAGCAACAACTCATGAATGACAACATGTGA 975 0.4349 MDEKGTRISNALSEEEMDLRRGPWTIDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCNVNSKQFKDTIRYLWMPRLVERIQAAAAASATKTVTTATTAITATTTVTTNNAYPYGNNLNNNFEVHNNSKMGLTPLIMNNDFVGSQSYTPENSSMAASSSDSFGTQVSTISDLADYYSVPVSSNNNTNLEDYYQPSQISYSDSITSPSGLFFQGLDFQSMDPNTSWNIQSEDSSEIFWNVENMLFLEQQLMNDNM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0455 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Ssu6g0455 324 CDD SANT 23 68 IPR001005 -
Ssu6g0455 324 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Ssu6g0455 324 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Ssu6g0455 324 Gene3D - 78 142 - -
Ssu6g0455 324 Gene3D - 18 74 - -
Ssu6g0455 324 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Ssu6g0455 324 CDD SANT 94 117 IPR001005 -
Ssu6g0455 324 PANTHER MYB TRANSCRIPTION FACTOR 1 319 - -
Ssu6g0455 324 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 319 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu6g0455 324 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Ssu6g0455 324 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Ssu6g0455 324 SMART sant 20 70 IPR001005 -
Ssu6g0455 324 SMART sant 73 121 IPR001005 -
Ssu6g0455 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0455 Ssu-Chr6 7095765 7097709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0455 1 309 MYB Transcription Factor Family AT3G06490 55.488 2.15e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g0455 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0455 K09422 - gmx:100791349 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0455 6 7095765 7097709 Ssu6g0455 6 7095765 7097709 ECH