Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0435 ATGAGCTACAACAACACGCGCCGGAGTCCGGGCGGTTTCCGCTCCGGCGGCGGGCCTCACCACCGAGCCTTCGACAGTCCGCCGCGTCGCTCGCCCGGCAGGGGGGGAGGATTCCGGCCAATGGGCGGCGAGGGTCCCGGGGAATTGGGATTCAACGGCCCCCAGCCGCCGCCGCTGGCCGGCCAGAAACGAGGGTTTCCTTTCTTCGGACGCGGTGGTTCGCCCgaTCGTTTAGATGGTGGAAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGAACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAAGAACATGGGAACGTGATTGAGGTTGCCCTCATTAAAGATAGAAAGACAGGACAGCATcaagGTTGTTGTTTCATAAAATATGCAACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAggtGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGgTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCACAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAGCAAAGTCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCTTTGGCAGCTATTAATGCACTCAATGGAATCTACACAATGAGAGGTTGTGACCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGACCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGCCCAGGATTTGGTCCTAGGTTCGATGCATCAGGCACAAGACTTCCATCCAATGTTACAGATCCTATGAGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAGTGCATCCGCTGAATATGGGTCCATCCTCTAATGCTGGTCTTCATGGCATGGGACCACCATTGCTTCCAAGATCTGGTGATATGGCATTGCCTATAAATGCAGGTGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCCAGTTCAGTCTATGCCATCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTATTCAATCATCCCAGGAACTGCCACCTTCTCACCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTCCTCTCTCTGCTGGTCCTCTTCCATCTCAGCAGATACAAGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGGTTTGTCTGCTGCTATTCCTCAGACCCCTTTTGATACCGGCATGCAATCTCATATTGCATTAACCATTCCAAATCAACAGCAAGTTCCTCCGTCTGTGCAGCAGCAGCCACTTCAGCCTCTACGGCAATCCCCTTCTCCATTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCAACCATTAACATTGCAGCATAATGCAGAAACTAATAAAAAGCAgTCTCAATGGGCTGGGACTGTAGCACAAGCGGTGGCCAGCACTCCTGCAGTTGCTCCTCCTGCGGATGTGCCTTTGTCCACACCTGCTACTTCTGCCTTACCAGCGATAAACCAGAACGTGGCTCTTGCCAAATGTAATTGGACAGAGCACATATCTCCGGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTATATGAACAGCAAAAACAACAGCAAAGGTCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATACTACCTGCCCAGCAAGTTACACAGATCCAACAGGTTCAGCCTCAAAGTCATCTCCATGGACAAATTCTCCACCAGCAACAAATACCGCAGCCTTCTTTGTCTTCTTCGTTCCAGGCATACGGAGTTACAGGCCATCAAAATGTTCAGgAAGTTGGTTATAAACAGTTACAGGCCTCGGCTATTTCTACTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAGTTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2211 0.4817 MSYNNTRRSPGGFRSGGGPHHRAFDSPPRRSPGRGGGFRPMGGEGPGELGFNGPQPPPLAGQKRGFPFFGRGGSPDRLDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFTKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDASGTRLPSNVTDPMSDRMPPPNAWRPVHPLNMGPSSNAGLHGMGPPLLPRSGDMALPINAGGPMTGLGGPIDGRFPVQSMPSMSQQNFNQPMPQIPPVNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLPLSAGPLPSQQIQGVSGQFPTSQPQTQQSGLSAAIPQTPFDTGMQSHIALTIPNQQQVPPSVQQQPLQPLRQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQPLTLQHNAETNKKQSQWAGTVAQAVASTPAVAPPADVPLSTPATSALPAINQNVALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQRSSVQQSQTQSQPSILPAQQVTQIQQVQPQSHLHGQILHQQQIPQPSLSSSFQAYGVTGHQNVQEVGYKQLQASAISTGDPGRYSQGIHSTQELMWKNKPAGV 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0435 736 Gene3D - 590 640 - -
Ssu6g0435 736 ProSitePatterns WW/rsp5/WWP domain signature. 595 620 IPR001202 GO:0005515
Ssu6g0435 736 SMART ww_5 590 622 IPR001202 GO:0005515
Ssu6g0435 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Ssu6g0435 736 PANTHER RNA BINDING PROTEIN 34 664 - -
Ssu6g0435 736 SUPERFAMILY RNA-binding domain, RBD 24 163 IPR035979 GO:0003676
Ssu6g0435 736 Pfam WW domain 594 620 IPR001202 GO:0005515
Ssu6g0435 736 MobiDBLite consensus disorder prediction 626 660 - -
Ssu6g0435 736 SUPERFAMILY WW domain 594 627 IPR036020 GO:0005515
Ssu6g0435 736 MobiDBLite consensus disorder prediction 255 283 - -
Ssu6g0435 736 CDD RRM2_FCA 176 255 IPR034645 -
Ssu6g0435 736 CDD WW 592 622 IPR001202 GO:0005515
Ssu6g0435 736 Gene3D - 172 263 IPR012677 -
Ssu6g0435 736 MobiDBLite consensus disorder prediction 356 454 - -
Ssu6g0435 736 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 34 664 - -
Ssu6g0435 736 MobiDBLite consensus disorder prediction 346 454 - -
Ssu6g0435 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 255 IPR000504 GO:0003723
Ssu6g0435 736 Gene3D - 79 171 IPR012677 -
Ssu6g0435 736 SUPERFAMILY RNA-binding domain, RBD 175 277 IPR035979 GO:0003676
Ssu6g0435 736 MobiDBLite consensus disorder prediction 1 76 - -
Ssu6g0435 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 149 IPR000504 GO:0003723
Ssu6g0435 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 243 IPR000504 GO:0003723
Ssu6g0435 736 ProSiteProfiles WW/rsp5/WWP domain profile. 595 622 IPR001202 GO:0005515
Ssu6g0435 736 SMART rrm1_1 176 251 IPR000504 GO:0003723
Ssu6g0435 736 SMART rrm1_1 85 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0435 Ssu-Chr6 6759284 6770366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0435 45 264 Eukaryotic Initiation Factors Gene Family AT4G34110 25.957 7.34e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0435 - - gmx:100798390 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0435 6 6759284 6770366 Ssu6g0435 6 6759284 6770366 ECH