Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0433 ATggaggaaaagagagagaaagaggcaGACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCTGATGAGATTCCGAGCATGAGCATGAGCACCAACATGAGCTTCCCTTTCTCCCCTGCTTTCTCCGGCATCTTTGACATgatgccgccaccaccaccaccatcctCGTGTGATGATCAAAAAGCTTCCAACTTTGGCGGCTTCATGGACTTGCTGGGTGTCCCCGATTATGGTTCTTCTTTATTCGACTGGCCCCAACACATCGCCGCCACGTTAGCACCGGCCACCCAGATCAGCCACCCGCTTCCGTCGCCGGCGAGCTCCAATGTCCCCGACGGCTCCGAGGTTTTGAACACTCCGGCGTCTCCCAACTCCACGTCGATTTCGTCGTCGTCGAATGAAGCCGCCGCCGCCGTCGCCGCCGCCAACAAAGCAACGGGGAATGAAAATGAAGCGGAAGATGAAACCATGGATGCAGGCAAAGGAGAAGACCAAGATCAGGACAAGGCTAAGAAACAGCTGAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCAGCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAAAAAGCCGTAAAAAACAGCCCACATCCCAGGAGCTACTATCGTTGCACCACCGCGGGTTGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCCGAGGACCCTTCGGTGGTGGTGACAACCTACGAGGGCCAGCACACGCACCCGTGTCCCGCCACGTCACGGGCTAGCCTCGGCCTCGGGTTCATGCACGAAGCAAGTGGGTTCGGACCCACCAGTGGACTTGGTTCGCCACACTTTGTGCTGCCACAACAACAGTTTCGGGACCAGAACATGCAGCACCAAGCACAAGCAGCAGTGGCTATGTTGTATAACTCCACCTCATCATCAACGCCTCTGAATGTCGTTAACTCGGCTTCTTGCGTTAACTATGTCAATACGTCGTCGTTGAGTGGCTTCCTTCAGGACCAACAGAATCGGCGAGGTTTTGGGGTGGGGGCTCCTCAGGCTTTGTTGATGGGCAATGGGCTTCTTCAGGATGTTGTGCCAACGCAGATGAGGAATGAGGAGATGGGAGATCATTAG 1161 0.5168 MEEKREKEADSKSSSTMANSVAFSDEIPSMSMSTNMSFPFSPAFSGIFDMMPPPPPPSSCDDQKASNFGGFMDLLGVPDYGSSLFDWPQHIAATLAPATQISHPLPSPASSNVPDGSEVLNTPASPNSTSISSSSNEAAAAVAAANKATGNENEAEDETMDAGKGEDQDQDKAKKQLKPKKKNQKKQREPRFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAGCGVKKRVERSSEDPSVVVTTYEGQHTHPCPATSRASLGLGFMHEASGFGPTSGLGSPHFVLPQQQFRDQNMQHQAQAAVAMLYNSTSSSTPLNVVNSASCVNYVNTSSLSGFLQDQQNRRGFGVGAPQALLMGNGLLQDVVPTQMRNEEMGDH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0433 386 MobiDBLite consensus disorder prediction 103 192 - -
Ssu6g0433 386 ProSiteProfiles WRKY domain profile. 198 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0433 386 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g0433 386 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 375 IPR044810 GO:0003700
Ssu6g0433 386 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 67 375 - -
Ssu6g0433 386 Gene3D WRKY domain 187 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0433 386 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0433 386 SUPERFAMILY WRKY DNA-binding domain 195 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0433 386 MobiDBLite consensus disorder prediction 103 140 - -
Ssu6g0433 386 SMART WRKY_cls 203 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0433 Ssu-Chr6 6746582 6748292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0433 13 383 WRKY Transcription Factor Family AT5G49520 39.231 1.42e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g0433 WRKY 3.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0433 - - gmx:100788697 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0433 6 6746582 6748292 Ssu6g0433 6 6746582 6748292 ECH
Ssu1g1209 1 26771397 26773340 Ssu6g0433 6 6746582 6748292 PCT