Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0431 AtggcatcatcatcatcatcatcgccATCATCATCGTCTATGATCTCAAACCCGGTAGCGAGCACGGACCGGTCACGTGACGCGAAGAGACGGAGAAAGAAGAAAGCGCAGCTGAGGCAGCAGCAAGAGGATCAGAGCCAGCCCAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCCTAGCCAGAGTCAACCTCGGCTCGGCTCCCCGCCGAGGCAAAGCCGTGCGCGAAGCCGCCGACAGAGTCCTAGCCGTGGCGGCCAAGGGGAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACGAAACACAAGAGACAGAGGGTCACAACGCCGCCAACGCGCTCAAAGAAACCGCGAGTCAGCGTTTACCGGCTGAAGGGGAAGGGTTCACCGGGAGTGCAGAGGAAAGTGAGGTTCTTAGGACGCTTGGTTCCCGGTTGCCGAAAAGAACCTTTACCGGTTATTTTGGAAGAAGCCATTGATTACATACCTGCGCTTGAGATGCAGGTTCGATCCATGACCGCTCTCGTTAACCTTCTCTCtggctcttcttcttcttcttcttcttcttccgcGCCGCCTAGCTCGTAA 630 0.5222 MASSSSSSPSSSSMISNPVASTDRSRDAKRRRKKKAQLRQQQEDQSQPKWKSQAQQQIYSSKLRQALARVNLGSAPRRGKAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFTKHKRQRVTTPPTRSKKPRVSVYRLKGKGSPGVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRSMTALVNLLSGSSSSSSSSSAPPSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0431 209 MobiDBLite consensus disorder prediction 1 57 - -
Ssu6g0431 209 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 15 206 - -
Ssu6g0431 209 CDD bHLH_AtIBH1_like 137 190 IPR044549 GO:0006355
Ssu6g0431 209 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 206 IPR044660 GO:0006355
Ssu6g0431 209 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g0431 209 MobiDBLite consensus disorder prediction 41 57 - -
Ssu6g0431 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 196 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0431 Ssu-Chr6 6703245 6703874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0431 46 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 56.442 1.54e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0431 - - gmx:100803765 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0431 6 6703245 6703874 Ssu6g0431 6 6703245 6703874 ECH
Ssu6g0431 6 6703245 6703874 Ssu1g1211 1 26888189 26888814 PCT