Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g0429 | ATGGAATCAGGAAACCCTTCATCAACGCCAACTTCTCCTTCCTCTGGTTTCAACACGGACCGGCTTCCTCACACCCACCCGAGCCATGCCTCCGAAGACGACGAGGCTTCCGTCGACCCCAACATCATAGGAGAGGATCTCGAAGAGCAACccgacgaagaagaagaagaagatggagAGGATCTTTACAACGACAATTTCATGGATGATTACGAGAGAATGGAGGAGGCTGACCAGTTTGAATCGTTTGGGCTGGATGACTCATTAGAGGATGACAGAGATTTTGATCAGATCATGGAGGATCTTAGGGCCACGGAGATTGAACTCGAAGCTCGCAATGATCGTGTTTCCAATCGCAACAATCTTCCCCACCTTCTCCGTGAccatgATACAGATGATGACAGTCATAGGCCTTCTAAAAGGGCTCGAGCTTATTACAGTCACTCAAGAGAGGATGTTCTCACAAGAGATGAAGTGCGCCGCTCCATAGCCAGGGAATTCAAGGACTTCTTACTCACGTATGTTAATCCAAAAAGTGAACATGAGGACAAGAAATATGTGTGGCTGATAAATGAGATGGTGACAGCTAATAAGTGCAGTTTGGACATAGATTAcaaacaatttaatgaatttatggATGTCAATGCCAAAATTGCCAATTGGCTGGTTAAAGCGCCTCGGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGCATTGTCTTTGAATTACATCCAAGTTACAGAGACATACACCAAAAGATTTATGTACGCATAACTAACTTGCCAGTTTATGATCAGATTCGAAATATTAGCAGGCAGATCCACTTGAATACAATGATCAGAATTGGGGGAATAGTAACCAGGCGCTCTGGAGTTCTCCCCCAGCTGCAGCAGGTGAAGTACGACTGTAACAAAtgtggagcaattttgggaccTTTTTCCCAGAATTCTTACTCAGAGGTGAAAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACTCTTCAAGAGAGCCCGGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATCCTGTTGAATGATCTGATTGACTGTGCTCACCCTGGGGAAGAGATTgaGGTCACAGGTATTTATTCTAATAACTTTGACTTATccctaaacacaaaaaatggGTTTCCAGTGTTTGCCACTGTTGTCGAGGCAAATTACGTTACGAAGAAGCAAGATCTTTTCGCCTCCTACAAACTTACACaggaagacaaagaagagattTTAAATTTGTCCAAAGACCCCCGAATCGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGAGGATATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGCCAAGAAAAAAATGTGGAAGGAAAGCATCGACTGCGGGGAGACATAAATGTTCTTCTTCTTGGTGATCCAGGAACAGCAAAGTCTCAGTTTCtcaaGTATGTTGAAAAAACTGGACAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCCGTGGTTCTCACAGCTGCAGTTCATAAGGATCCAGTTACAAGGGAGTGGACTCTTGAGGGGGGAGCTCTTGTTTTAGCTGACAAAGGAATTTGTCTAATTGATGAGTTTGACAAGATGAATGACCAAGATAGGGTAAGTATTCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCCGCAAATCCTATTGGAGGAAGATATGATTCctcaaaaacattttctcaaaatgTTGAATTGACAGAGCCTATTATTTCTCGTTTTGACGTCCTCTGCGTCGTCAAGGATGTTGTTGATCCGGTCCCTGATGAAATGCTTGCAACATTTGTCGTGGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACAAAGATGACAAGTCCTTTGTTGAGTCCCAAGATGTCCATGCATCTGCAATGCCAGCTGATCCCGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCGAAGCTACATGATGCGGATATGAATAAACTGTCACATGTCTATGCTGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACATCATGTTACCCAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACACAAAAATTTGGGGTGCAGAAAGCTCTTCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTCCTTTTTCTTCTCCGCATGCTTGTAAAGAATGCTATGCATTTCGAAGAAGTTGTCACCGGATCTGCTTCAGGTCCAACGTATGTAGATGTCAAAGTAGATGATCTCTACAACAGGGCTCAAGAGCATGACATTTATGATCTGAAACCATTCTTCAGTAGCAGCCACTTTTCAATGGCCAATTTTGTGTTGGATGAAGAACGGAAAGTGATCAGACATCACCATACCAGATGA | 2655 | 0.4072 | MESGNPSSTPTSPSSGFNTDRLPHTHPSHASEDDEASVDPNIIGEDLEEQPDEEEEEDGEDLYNDNFMDDYERMEEADQFESFGLDDSLEDDRDFDQIMEDLRATEIELEARNDRVSNRNNLPHLLRDHDTDDDSHRPSKRARAYYSHSREDVLTRDEVRRSIAREFKDFLLTYVNPKSEHEDKKYVWLINEMVTANKCSLDIDYKQFNEFMDVNAKIANWLVKAPRSVLEVMEDVTKSIVFELHPSYRDIHQKIYVRITNLPVYDQIRNISRQIHLNTMIRIGGIVTRRSGVLPQLQQVKYDCNKCGAILGPFSQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCAHPGEEIEVTGIYSNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFASYKLTQEDKEEILNLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVVLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTEPIISRFDVLCVVKDVVDPVPDEMLATFVVDSHFKSQPKGANKDDKSFVESQDVHASAMPADPEILPQELLKKYITYAKLNIFPKLHDADMNKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRHHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLFLLRMLVKNAMHFEEVVTGSASGPTYVDVKVDDLYNRAQEHDIYDLKPFFSSSHFSMANFVLDEERKVIRHHHTR | 884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0429 | 884 | Pfam | MCM N-terminal domain | 165 | 261 | IPR027925 | - | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 489 | 504 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 601 | 613 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 628 | 636 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 577 | 590 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | PANTHER | DNA HELICASE | 96 | 873 | - | - | |
| Ssu6g0429 | 884 | Gene3D | - | 428 | 801 | IPR027417 | - | |
| Ssu6g0429 | 884 | Coils | Coil | 99 | 119 | - | - | |
| Ssu6g0429 | 884 | Pfam | Mini-chromosome maintenance protein 2 | 33 | 157 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | Gene3D | - | 157 | 264 | - | - | |
| Ssu6g0429 | 884 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Ssu6g0429 | 884 | MobiDBLite | consensus disorder prediction | 120 | 142 | - | - | |
| Ssu6g0429 | 884 | MobiDBLite | consensus disorder prediction | 38 | 64 | - | - | |
| Ssu6g0429 | 884 | CDD | MCM2 | 451 | 777 | - | - | |
| Ssu6g0429 | 884 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 96 | 873 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | Gene3D | - | 296 | 346 | - | - | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 397 | 408 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 278 | 295 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 336 | 350 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 301 | 313 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 412 | 423 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Ssu6g0429 | 884 | SUPERFAMILY | Nucleic acid-binding proteins | 167 | 417 | IPR012340 | - | |
| Ssu6g0429 | 884 | Pfam | MCM AAA-lid domain | 694 | 778 | IPR041562 | - | |
| Ssu6g0429 | 884 | SMART | mcm | 264 | 779 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Ssu6g0429 | 884 | ProSiteProfiles | MCM family domain profile. | 448 | 654 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | Gene3D | - | 273 | 394 | IPR012340 | - | |
| Ssu6g0429 | 884 | Pfam | MCM P-loop domain | 436 | 658 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu6g0429 | 884 | Pfam | MCM OB domain | 268 | 395 | IPR033762 | - | |
| Ssu6g0429 | 884 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 458 | 781 | IPR027417 | - | |
| Ssu6g0429 | 884 | ProSitePatterns | MCM family signature. | 557 | 565 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g0429 | Ssu-Chr6 | 6674105 | 6678846 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0429 | 16 | 879 | Core DNA Replication Machinery Family | AT1G44900 | 68.920 | 0.0 | 1234 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g0429 | K02540 | - | gmx:100799441 | 1495.33 |