Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0428 ATGCAGAGTTCAGCCCAAGCACGTGTCAGTCCaacaagagagagaaatggCGCCAAACTTTTCCCGCCAAACGGGGTGCCCCCCACTAAAGAGCGGTTTGCTATCCCTTGCCCTGCGCGGAGAATAAATATTTGGAAAAGGAACAACCCTGAGAGTGAGACTGAGACTGAGATTCGCAGAGGCAGAGAGCGCAGATTTAGAGCAAGAAGCATGGAATCAGGAAACCCTTCATCCACGCCCGATCCCGAATCGCCAACTTCTCCTTCCGTTGGTTTCAACACGGACCAGCTGCCTCACACCCACACGAGCCGTGCCTCCGAAGATGACGAGGCTTCCGTCGATCCCGATATCATACGAGACGATGCTGAAGAACAGcctgaggaagaagaagatggagAGGATCTTTACAACGACAATTTCATGGATGATTACAGGAGGATGGAGGAGGCCGACCAGTTCGAATCGTTTGGGCTGGATGACTCGTTGGAGGATGACAGAGATTTTGATCAGATTATGGAGGATCGAAGGGCCGCTGAGATTGAACTCAACGCTCGCGAAGGTCGTGTTTCCAACCGCAGCAAGCTTCCCCAGCTTCTCCACGATCAGGATACAGATGATGACAGTCACAGGCCTTCTAAAAGGGCTCGAGCTGATTACAGGCCTTCTGTACCAAGTGACGATGATCTCGATGGGATGCAAAGTTCACCTGGAAGGTCACAACGAGGTCACTCAAGAGAGGATGTTCCTATGACTGATCAAACTGAGGATGATCGAGATGATGATGAATTTGACGATGAAGGTGGGTACGAGATGTATCATGTTCAAGGAACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTCACGTATGTTAATCCAAAAAATGAACACGGGGACAAGGAATATGTGTGGCTGATAAATGAGATGGTGACAGCTAATAAGTGCAGTTTGGAGATAGACTACAAACAATTTATCTATGTCCATCCCAACATTGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTACCAAAAGCGTTGTCTTTGAATTACATCCAAGTTACAGAGACATACACCAAAAGATTTATGTACGCATAACTAACTTGCCAGTTTATGATCAGATTCGAAATATTAGGCAGATCCACTTGAATACAATGATCCGAATTGGAGGAGTAGTAACCAGGCGCTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTACGACTGTAACAAAtgtggagcaattttgggaccTTTTTTCCAGAATTCTTACTCAGAGGTGAAAGTTGGATCCTGTCCCGAGTGTCAATCGAAAGGACCGTTCACTGTCAACATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACTCTTCAAGAGAGCCCAGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATCCTATTGAATGATCTGATTGACTGTGCTCGCCCTGGGGAAGAGATTgaGGTCACAGGTGTTTATACTAATAACTTTGATTTATccctaaacacaaaaaatggGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTACATTACGAAGAAGCAAGACCTTTTATCTTCCTACAAACTTACACAGGAAGATAAAGAAGAGATTTTAAATTTGTCCAAAGACCCCCGAATCGGAGAGAGGATTATCAAGTCTATTGCTCCATCAATCTATGGCCATGAGGATATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGCCAAGAAAAAAATGTGGAAGGAAAGCATCGACTACGAGGAGACATAAATGTTCTTCTTCTCGGGGATCCAGGAACAGCAAAGTCTCAGTTTCTCAAGTACGTTGAAAAAGCTGGGCAGAGAGCTGTATACACGACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTTGAGGGGGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTAATTGATGAGTTTGACAAGATGAATGACCAAGATAGGGTAAGTATTCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCTGCAAATCCTATTGGAGGAAGATATGATTCctcaaaaacattttctcaaaatgTTGAATTGACAGATCCTATTATTTCTCGTTTTGATGTCCTCTGCGTTGTGAAGGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACATTTGTCGTGGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACAAAGATGACAAGTCCTTTGGTGAGTCCCAAGATGTCCATGCATCTGCCATGCCAGCTGATCCCGAGATACTTCCTCAAGAACTACTGAAGAAGTACATTACATATGCCAAATTGAATGTTTTTCCAAAGTTACATGATGCCGATATGAACAAACTGTCACATGTCTATGCTGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCAAGAATGCATCTTAGACAACATGTTACCCAAGAGGATGTGGACATGGCAATTCGTGTTCTACTCGAATCATTCATTTCAACACAAAAATTTGGGGTGCAGAAAGCTCTTCAAAagAGCTTTAGAAAGTATATGACTTTCAAGAAGGATTATAATGAATTGCTCCTTTATCTGCTCCGCATGCTTGTAAAGAATGCTTTGCATTTCGAAGAAGTTGTCACTGGATCTACTTCAGGTCTAACGTATGTAGATGTCAAAGTAGATGATCTCTACAACAAGGCTCAAGAGCATGACATTTATGATCTGAAACCATTCTTCAGTAGCAGCCACTTTTCAATGGCCACTTTTGAATTGGATGAAGAACGGAAAGTGATCAGACATCACCTTACCAGATGA 3027 0.4248 MQSSAQARVSPTRERNGAKLFPPNGVPPTKERFAIPCPARRINIWKRNNPESETETEIRRGRERRFRARSMESGNPSSTPDPESPTSPSVGFNTDQLPHTHTSRASEDDEASVDPDIIRDDAEEQPEEEEDGEDLYNDNFMDDYRRMEEADQFESFGLDDSLEDDRDFDQIMEDRRAAEIELNAREGRVSNRSKLPQLLHDQDTDDDSHRPSKRARADYRPSVPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRDDDEFDDEGGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDKEYVWLINEMVTANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPSYRDIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYITKKQDLLSSYKLTQEDKEEILNLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKAGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANKDDKSFGESQDVHASAMPADPEILPQELLKKYITYAKLNVFPKLHDADMNKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRMLVKNALHFEEVVTGSTSGLTYVDVKVDDLYNKAQEHDIYDLKPFFSSSHFSMATFELDEERKVIRHHLTR 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 460 474 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 402 419 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 536 547 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 425 437 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 521 532 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 138 153 - -
Ssu6g0428 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 905 IPR027417 -
Ssu6g0428 1008 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 209 997 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 Pfam Mini-chromosome maintenance protein 2 107 258 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Ssu6g0428 1008 Pfam MCM P-loop domain 560 782 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 Gene3D - 552 925 IPR027417 -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 71 100 - -
Ssu6g0428 1008 Pfam MCM AAA-lid domain 818 902 IPR041562 -
Ssu6g0428 1008 CDD MCM2 575 901 - -
Ssu6g0428 1008 SUPERFAMILY Nucleic acid-binding proteins 294 541 IPR012340 -
Ssu6g0428 1008 Gene3D - 285 389 - -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 198 225 - -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 253 267 - -
Ssu6g0428 1008 Pfam MCM N-terminal domain 293 386 IPR027925 -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 113 137 - -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 1 267 - -
Ssu6g0428 1008 PANTHER DNA HELICASE 209 997 - -
Ssu6g0428 1008 SMART mcm 389 903 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 ProSiteProfiles MCM family domain profile. 572 778 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 Pfam MCM OB domain 392 519 IPR033762 -
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein family signature 725 737 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein family signature 752 760 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein family signature 701 714 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein family signature 673 687 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 PRINTS Mini-chromosome maintenance (MCM) protein family signature 613 628 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 785 805 - -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 168 188 - -
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 46 70 - -
Ssu6g0428 1008 Gene3D - 393 518 IPR012340 -
Ssu6g0428 1008 Gene3D - 420 470 - -
Ssu6g0428 1008 ProSitePatterns MCM family signature. 681 689 IPR018525 GO:0003677|GO:0005524|GO:0006260
Ssu6g0428 1008 MobiDBLite consensus disorder prediction 786 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0428 Ssu-Chr6 6655654 6661048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0428 91 1003 Core DNA Replication Machinery Family AT1G44900 75.354 0.0 1369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0428 K02540 - gmx:100799441 1698.33