Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0425 ATGAACATGCCTATCTTGAGTGCTACTCCATCTATTATCTCTCATGCTCTCCAGCCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACTTGAGTAATGAGAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCCAAGAGACTTATTAAGGCTGCACTCCACGAAGCAGCGAGAAAACGAGAAATGCGATATTCAGACCTCCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACCAGGCACTTTCAATTCGAAGCGCTCTCGATCACTGA 363 0.4215 MNMPILSATPSIISHALQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDQALSIRSALDH 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0425 120 SUPERFAMILY PP2C-like 4 98 IPR036457 -
Ssu6g0425 120 Pfam Protein phosphatase 2C 5 68 IPR001932 -
Ssu6g0425 120 Gene3D - 1 106 IPR036457 -
Ssu6g0425 120 ProSiteProfiles PPM-type phosphatase domain profile. 1 97 IPR001932 -
Ssu6g0425 120 PANTHER ALPHABET, ISOFORM E-RELATED 3 120 - -
Ssu6g0425 120 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0425 Ssu-Chr6 6616655 6618048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0425 1 117 PP2C-type Phosphatase Gene Family AT5G66080 63.559 9.07e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0425 K01102 - gmx:100790813 230.72