Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0424 ATGCTCCAGGCATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCGTTCGGCCGCGATGCTGATCGAATCGATTCCATTGGAGTTATCGGGAGCAGCTTCGCCGGAAGAGAAGGCAAAGACGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGGCTCCGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCGTCGGCATATACGACGGTCACGGAGGACCCGACGCCTCCAGATACGTATGCGATCACTTGTTTCGCCATTTTCAAGCAGTATCGGCTGAGTCACGCGGGGTTGTGACAACTGAGACAATTGAACAGGCATTTCGCCAGACGGAAGAGGGATACACGGCCCTCGTGTCAGGCTTGTGGAATGCTCGACCTCAAATTGCAAGTGCTGGGACCTGTTGTCTAGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAATGTTGGCGATTCCCGCGTTGTATTGGGAAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCCACAGAACACAATGCAAATCTTGAGGCCGTCAGACAGGAACTTAAAGAATTACACCCTCATGATCCCCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCagGTTTCTAGATCTATAGGTGACGTATATTTGAAACAGTGCACAGTTTAA 738 0.5041 MLQALMNLFSLCWKPFGRDADRIDSIGVIGSSFAGREGKDGLLWFRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQAVSAESRGVVTTETIEQAFRQTEEGYTALVSGLWNARPQIASAGTCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKQCTV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0424 245 SMART PP2C_4 42 245 IPR001932 -
Ssu6g0424 245 ProSiteProfiles PPM-type phosphatase domain profile. 55 245 IPR001932 -
Ssu6g0424 245 PANTHER ALPHABET, ISOFORM E-RELATED 3 242 - -
Ssu6g0424 245 Gene3D - 47 244 IPR036457 -
Ssu6g0424 245 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 242 - -
Ssu6g0424 245 CDD PP2Cc 56 242 IPR001932 -
Ssu6g0424 245 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Ssu6g0424 245 SUPERFAMILY PP2C-like 64 241 IPR036457 -
Ssu6g0424 245 Pfam Protein phosphatase 2C 79 242 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0424 Ssu-Chr6 6614094 6616614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0424 1 242 PP2C-type Phosphatase Gene Family AT3G17090 68.571 2.99e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0424 K01102 - gmx:100790813 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0424 6 6614094 6616614 Ssu6g0424 6 6614094 6616614 ECH
Ssu6g0424 6 6614094 6616614 Ssu1g1214 1 26936681 26941564 PCT