Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0414 ATGGGAACTCCACCAACGGACGAGCTTATGAAGAAGATCCAGCAGCTGGAGGAGGGGCACGCGCACCTGACGCAAGAAATGTCAAAGCTGAAACTCTCCGATGTGAGGCACGGCCATCGCCAGAGGTCTCACTCCGTGTCTCCGCAGCGTTCGAGATTGGGTGCACCGCCGAAGAAGCGAAGCGATGCACCGGCGGCGTGGAAGAGAGGTTCCTGTTCGTTTAAACAGTCCTCGCCGTTGCAGAGGGAGAGTCGCGGCGGCGATCCTCAAATTCacggaggaggaggagaagaagaagctgCTCCGCGCTGTGGTCCTTCCGCTGTGAATTTCACGGAACGCCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTCTAGGGCAGGACGGGATTGAGTTGCTTGTGGACCCTAGGGATTTGGCCTTAGCCAATGATACAGTGAACCGTGTCATGATGGGAGAGAGCTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGAGTGAAGTTTTCAGCAGTAGCGACTAATACGCCTTTCTATGATGATGATGGAAGCTTAGTTGGCGTTATTTGTGTCTCTAGTGATTCACGGTCCTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAGCGCTGACTCTGATTCAGATTCGGGTGGAACCCGACCTAGAAGTAGCATTACGAATAAACTTGGCATTGACACTCAACAGCCGCTTCAAGTTGGTCTTGCAtcgaaaatttcaaatttgGCATCAAAGGTGAGTAACAAAGTTAAGTCAAGGATCTGGATGGGAGAAAATAACGTGGATCGTGAAGGTGGGAGCAGTGAAAGTCATCATTCTGAGCATAGTTTCTTGGAATCTGTTCTTTCAGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCGACCTGGTGTATTTTCTCACATCGAAGAAAAATCCCAGGGAAAAGCTCTGAGAGAGTCTGGTGATGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAGGGAAAACGTTATCATGGCCATGGAGAACGAAGGATCAAGAAGGATCAGAGGCTCGTGTTGCTGGGCCCTGGAATCAGGAAAATGAGTCAGTTAATCAGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGCAGGTGAAAGTAATCGCCTTAATAACAACGAGGCTTCAGGATCCTGGTTCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGACAGTTGTGCTGTCAATAGTAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAGGTTTTCTCGAAGCAAGAATATTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTCATGGGGGCTGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTATGTCGCTTGTTGCACAGAAACACATCTAAACTTGATTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGGGTAAATTATCTTCATCATTGTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAGGAACTGGACTGTTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTATACAGCTTTGGAGTAATATTATGGGAACTTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGctagaaattccaaaaaatgttGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGCGATCCAGCTTGCCGGGCTACATTCCCGGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAGTGGTATGCCATTCAGTTCCAGGCAACCCGATCCACTGGCAAGGAAAGCACCCAAAAGGAGTCCTAG 2289 0.4565 MGTPPTDELMKKIQQLEEGHAHLTQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPKKRSDAPAAWKRGSCSFKQSSPLQRESRGGDPQIHGGGGEEEAAPRCGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGQDGIELLVDPRDLALANDTVNRVMMGESWTGQFPVKNKMGVKFSAVATNTPFYDDDGSLVGVICVSSDSRSFLEMKVPMSGVRSADSDSDSGGTRPRSSITNKLGIDTQQPLQVGLASKISNLASKVSNKVKSRIWMGENNVDREGGSSESHHSEHSFLESVLSDQREDANSSGASTPRGDVRPGVFSHIEEKSQGKALRESGDESEGKSIHKIIPAKAEAWIQGKTLSWPWRTKDQEGSEARVAGPWNQENESVNQKILSSGLKQESQAGESNRLNNNEASGSWFSFNVNSTSSASSCGSADSCAVNSKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDRNWTVVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHSDPACRATFPELLERLRELQKWYAIQFQATRSTGKESTQKES 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0414 762 MobiDBLite consensus disorder prediction 26 105 - -
Ssu6g0414 762 TIGRFAM sensory_box: PAS domain S-box protein 113 224 IPR000014 -
Ssu6g0414 762 MobiDBLite consensus disorder prediction 240 262 - -
Ssu6g0414 762 Pfam Protein tyrosine and serine/threonine kinase 483 736 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 MobiDBLite consensus disorder prediction 320 334 - -
Ssu6g0414 762 PRINTS Tyrosine kinase catalytic domain signature 644 654 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 PRINTS Tyrosine kinase catalytic domain signature 596 614 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 PRINTS Tyrosine kinase catalytic domain signature 707 729 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 PRINTS Tyrosine kinase catalytic domain signature 557 570 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 PRINTS Tyrosine kinase catalytic domain signature 663 685 IPR001245 GO:0004672|GO:0006468
Ssu6g0414 762 CDD PAS 123 224 IPR000014 -
Ssu6g0414 762 Pfam PAS fold 115 222 IPR013767 GO:0006355
Ssu6g0414 762 Gene3D Phosphorylase Kinase; domain 1 476 560 - -
Ssu6g0414 762 CDD STKc_MAP3K-like 489 736 - -
Ssu6g0414 762 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 27 760 - -
Ssu6g0414 762 Gene3D PAS domain 124 228 - -
Ssu6g0414 762 SUPERFAMILY PYP-like sensor domain (PAS domain) 112 224 IPR035965 -
Ssu6g0414 762 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 760 - -
Ssu6g0414 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Ssu6g0414 762 MobiDBLite consensus disorder prediction 301 319 - -
Ssu6g0414 762 SMART serkin_6 483 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0414 762 ProSiteProfiles PAS repeat profile. 112 183 IPR000014 -
Ssu6g0414 762 SUPERFAMILY Protein kinase-like (PK-like) 472 736 IPR011009 -
Ssu6g0414 762 MobiDBLite consensus disorder prediction 236 262 - -
Ssu6g0414 762 MobiDBLite consensus disorder prediction 341 366 - -
Ssu6g0414 762 Coils Coil 6 33 - -
Ssu6g0414 762 ProSiteProfiles Protein kinase domain profile. 483 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0414 762 MobiDBLite consensus disorder prediction 296 366 - -
Ssu6g0414 762 SMART pas_2 114 181 IPR000014 -
Ssu6g0414 762 Gene3D Transferase(Phosphotransferase) domain 1 562 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0414 Ssu-Chr6 6439587 6446364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0414 1 753 MAP Kinase Kinase Kinase AT3G06620 58.259 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu6g0414 PK_Tyr_Ser-Thr 5.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0414 - - gmx:100800867 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0414 6 6439587 6446364 Ssu6g0414 6 6439587 6446364 ECH
Ssu6g0414 6 6439587 6446364 Ssu1g1219 1 27019193 27025737 PCT