Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0407 ATGGTTGACAATTTCAGTATAGAGAGCAGGCTTCTTATAAGAGAGTTTGATGAAGATAGAGATGTTAAGGTGGTGGGGAAGCTTGAGAGGAACTGTGAGATTGGGACTAAAAAAGGGGTCTCCATTTTCACCAACATGATGGGTGACCCTTTATCTAGGATTAGGTTCTATCCCCTTCATGTTATGTTGGTGGCTGAGCTGCTTGAAAGCAGGGAGCTTGTCGGTGTGGTTCGAGGGTGCATTAAGAGTATGCGAACTCCTTCTGAATCATTGTTGAAGATTGGTTGCATCCTAGGCCTTAGGGTCTCTCCTACACACAGGAGAAAGGGGGTTGGACTAAAACTTGTCACCTCAGTTGAAGAATGGATGCTGAGAAATGGGGCTGAATACGCATTCCTAGCCACTGAAAAGAAGAACGATGCCTCTAGAAACCTATTTACCAACAAATGCAAATATGTGAGCCTCAGCTCACTTGTCATATTTGTCCATCCAATTAGTTTCCCTGCAAAGCATGTTTCCAAGGATATAAAAATCGAAAAGGTAAACATAGACCAGGCAATTTCCTTATACAGAAGAACCCTGAGGGCCAAAGAGTTGTATCCATTAGACATGGACtctattttgaaagagaagCTCAGCTTGGGCACCTGGGTGAGTTATTACAAAGATGAAGGCTGGCTCAACTTGCAGAAAAAGGTAGAAAGTGAAGACATAATCACCAATGAAATCACAAGCTCATGGATCATCTTTAGCATATGGAATACTTGTGAAGCTTATAAGCTTCAACTTAAAAAGTCTCAGCCGCTTAGGTTTCTTCACACAACTTTAAATCATGCAAGAGACAAAATTTTCCCTTGTCTGAGAATGTCGGTGAGTGACTCACTCTGCAGACCCTTTGGGTTTCTTTTCCTCTATGGACTCCATGGAGAGGGAGAGAACCTTGGGGGGCTAATGGAATCCATTTGGAGGTTCACATCAAGGTTGGGAGAAAGTTTGAAGGACTGTAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATCCACTTGTAAACCATGTTCCTCAAACAGCTTCTATGTCCTGTATCGATGATATTTGGTACACCAAAAGACTTTCAAGCCATAGTGACGAAAAGGATGATGAACTGCTGATGAAGAGACAAATCGGGAATGTGTTTGTTGACCCTAGAGATTTTTAG 1194 0.4196 MVDNFSIESRLLIREFDEDRDVKVVGKLERNCEIGTKKGVSIFTNMMGDPLSRIRFYPLHVMLVAELLESRELVGVVRGCIKSMRTPSESLLKIGCILGLRVSPTHRRKGVGLKLVTSVEEWMLRNGAEYAFLATEKKNDASRNLFTNKCKYVSLSSLVIFVHPISFPAKHVSKDIKIEKVNIDQAISLYRRTLRAKELYPLDMDSILKEKLSLGTWVSYYKDEGWLNLQKKVESEDIITNEITSSWIIFSIWNTCEAYKLQLKKSQPLRFLHTTLNHARDKIFPCLRMSVSDSLCRPFGFLFLYGLHGEGENLGGLMESIWRFTSRLGESLKDCRVVITELGFGDPLVNHVPQTASMSCIDDIWYTKRLSSHSDEKDDELLMKRQIGNVFVDPRDF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0407 397 CDD NAT_SF 62 133 - -
Ssu6g0407 397 Gene3D - 27 165 - -
Ssu6g0407 397 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 2 397 - -
Ssu6g0407 397 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 397 - -
Ssu6g0407 397 Pfam Acetyltransferase (GNAT) family 65 150 IPR000182 GO:0016407
Ssu6g0407 397 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 11 234 IPR000182 GO:0016407
Ssu6g0407 397 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 9 147 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0407 Ssu-Chr6 6381377 6382974 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Ssu6g0407 Acetyltransf_1 3.5e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0407 - - gmx:100814448 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0407 6 6381377 6382974 Ssu6g0407 6 6381377 6382974 ECH
Ssu6g0407 6 6381377 6382974 Ssu1g1227 1 27142323 27144103 PCT