Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0405 ATGGCGTTTTGGTGGTCATTGCTCGTTTTAGCATTCGCTTACGGTATCTGTAGGTTCCTTCTCATGCTCATTCCTCCTAAGGTTCCTTCCATCGACGTTGACACTTCCGATgTGTTGGACGATGGAAACCAAGCGCAGGAGAATAGCTTCATATAtGATTTGTCATTGGTTCCAATTCAGGTACCTCCGAGGGGAGCATCGCAGCAATCAGGGAAGATAGTTCAGTGCTATGAGCCTGCAACTATGAAATATTTGGGATATGTTCCTGCATTGACGCATGATGAGGTCAAGGATAGAGTGGCAAAAGTAAGGAAGGCACAAAAAATGTGGGCAAAGTCCAGCTTCAAGCAAAGACGCTTGTTTCTTCGTAtacttctaaaatatataattaaacatcaaGCGCTTATATGCGAAATATCTTCGCGTGATACTGGAAAGACAATGGTAGATGCCTCTTTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAGCAATGGTTAAAGCCTGAATACCGGTCTTCTGGAAGATCAATGCTTCATAAGAGAGCTAAAGTAGAATTTCATCCCCTTGGTGTTATTGGAGCCATTGTTTCATGGAATTATCCTTTCcacaatatttttaatcctatgCTGGCAGCAATTTTTTCTGGAAACGGTATTGTGATTAAGATATCAGAACATGCTAGTTGGTCAGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACTGGAGAAGCATTAGTATCTTCTGTTGATAAAGTCATATTTGTTGGATCACCTGGTGTTGGTAAGATGATAATGAAAAATGCTGCTAACACACTTATACCAGTGACACTGGAGCTTGGTGGGAAAGATGCATTTATTGTTTGTGAAGACGTAGATCTGGACCATGTTGCACAAATTGCTGTCAGGGCTGTTCTTCAGTCAAGTGGACAGAACTGTGCTGGGGCTGAGCGATTTTATGTCCACAGGgaaatttattcttcttttgttaGTAAAGTTACCAAAATCGTGAAGTCTGTTACAGCTGGCCCACCACTAGCTGGAAAGTATGATATGGGAGCTTTATGCATGCATGAACATTCTGAAAAGCTTGAAGGCCTTATAAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCCCGTGGGAGTCTTGGACATATAGGTGAAGATGCAGTTGATCAATATTTCCCCCCTACTGTGATTGTGAACGTGAACCACTCAATGAGATTGATGCAAGAAGAGGCATTTGGACCAATCATGCCCATAATGAAATTCAGCTCTGATGAGGAGGTTGTCAGGCTTGCAAATGACTCAAAATATGGTCTCGGCTGTGCTGTTTTCTCTGGCAGTCAGGGCCGTGCCAGAGAGATAGCTTCACAGATACATACTGGGGTAGCTGCAGTTAATGATTTTGCCGCAACATACATGTGTcagTCCCTGCCATTTGGGGGTGTGAAACATAGTGGATTTGGACGATTTGGTGGTGTAGAAGGTTTGCGAGCTTGCTGTCTTGTTAAAGCAGTTGTTGAAGATCGATGGTGGCCATTTGTCAAAACCAAGATACCTAAGCCTATTCAGTATCCTGTTGCAGAGAATGGATTCGAATTTCAGGAGTCACTTGTTGAAGCGCTTTATGGCCTCGGCATATGGGACCGTTTGCGAGCATTAGTAAACGTTTTAAAAATGCTTACTGAGCAGAATCCTGGTGGCAACAGCAGTAAGAAAAGAAACGACTGA 1818 0.4197 MAFWWSLLVLAFAYGICRFLLMLIPPKVPSIDVDTSDVLDDGNQAQENSFIYDLSLVPIQVPPRGASQQSGKIVQCYEPATMKYLGYVPALTHDEVKDRVAKVRKAQKMWAKSSFKQRRLFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQWLKPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAAIFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMKNAANTLIPVTLELGGKDAFIVCEDVDLDHVAQIAVRAVLQSSGQNCAGAERFYVHREIYSSFVSKVTKIVKSVTAGPPLAGKYDMGALCMHEHSEKLEGLINDALDKGAEIVARGSLGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVVRLANDSKYGLGCAVFSGSQGRAREIASQIHTGVAAVNDFAATYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFVKTKIPKPIQYPVAENGFEFQESLVEALYGLGIWDRLRALVNVLKMLTEQNPGGNSSKKRND 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0405 605 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 508 IPR016163 GO:0016620
Ssu6g0405 605 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 569 - -
Ssu6g0405 605 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 533 IPR016162 GO:0016491
Ssu6g0405 605 SUPERFAMILY ALDH-like 67 540 IPR016161 GO:0016491
Ssu6g0405 605 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 569 - -
Ssu6g0405 605 Pfam Aldehyde dehydrogenase family 69 535 IPR015590 GO:0016491
Ssu6g0405 605 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Ssu6g0405 605 CDD ALDH_F15-22 77 539 - -
Ssu6g0405 605 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0405 Ssu-Chr6 6345989 6353480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0405 1 604 Aldehyde Dehydrogenase Gene Family AT3G66658 77.483 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0405 - - gmx:100802990 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0405 6 6345989 6353480 Ssu6g0405 6 6345989 6353480 ECH