Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0388 ATGGCGAAGTCAAAGAACCACACGGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAAAGGGATGGATCCCAAGTTTCTGAGGAACCAGAGGTACGCAAGGAAGCATAACAAGAAGAGCGGTGAAACAGCCACGGAAGAAGAGTAA 186 0.5054 MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKSGETATEEE 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0388 61 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g0388 61 Gene3D - 1 61 - -
Ssu6g0388 61 PANTHER 60S RIBOSOMAL PROTEIN L29 1 61 - -
Ssu6g0388 61 PANTHER 60S RIBOSOMAL PROTEIN L29 1 61 IPR002673 GO:0003735|GO:0005840|GO:0006412
Ssu6g0388 61 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Ssu6g0388 61 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0388 Ssu-Chr6 6181013 6181331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0388 1 61 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 85.246 5.93e-34 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0388 K02905 - gmx:100803210 131.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0388 6 6181013 6181331 Ssu1g1253 1 27744855 27745181 PCT