Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0385 atgttaaatatgaatactcaaaagacaaaaatatctaCTATCGTCGgtgccatcaccaccactattgtcgccaccaccactgtcgctGCCACCAACACTACTATTATGGCTACCTTCATCGCTATCACTACCATCGTTGCTGCTACCACTattgtcaccaccatcatcattgtcGTTACCGCTGCCACTAGTGTGGTTGTCTCCACCATCACTGTTatcatcaccgccaccaccGCCATCACTGTCACCGttgttgccaccactaccaccatcctCGCAATTGTTACTCTTGCTATCATCACCATCGTCGtcAATAGAAAGCAGAAAGGaaatatatccaaaaaaaaaaaaaaaaacagaaaggaACAGAAAAAAGAGTGTTATTCAGCTCCCACGAGGCGATCATTTTTCTATCTGTTCCAACCCGAGCAAACCCACCCTTCTCTGCAATCAGTTGCTGACTTTGCGGTGAGAGAAAAGTGTTCGGAATCTCCCAAGGTTTCTGTGGATATGGCGCATAACTTAACGGCCCAACTGGTGGGTTCAGAAATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCAAATGAGATTCATGCCATGCTTtgtaattacaagtattttacCGTTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACaactggaaaaagaaaaaggatgggaAAACCGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCAAAATTTCGTTCGTAGATGTTATTGGCTGCTTAATAAgAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGCTCTCCTGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTATTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGGACCACAACTACTTATGCTGGTGACATGAGTGACAATATAAATGTCAGAAGTCATGAACTGAGACTCCATGAGATTAATACACTTGAATGGGATGACCTAGTGGATGCAAATGATCATGATGCCTCTACCGTGCCTAATGGAGGCACTGTTCCATATTTTGATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGCCAGCAATCTATCTGCAGAAATTCCTTCTTTTGATAGTCTTACTCAGCCAATTGCTGGAAGCAACAGTGTTCCTTACAATTTTTCAGAAAGTGTTAATCTTCAGACAATGGACAATCAAGCAAATCCTATTGAGCAGAGGAATCATACTGTTTCTTTAAGTGGTGTTGATTCCTTGAACACTTTGGTCAATGATAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCCCCGTGTTCAGTAGATGACCCAACTCTTGAATCACCAGTTTCATCCATTCATGACCCATATTCGTCTCTGGTAGTGGATAATCAGCAATTTTCTCTGCCAGAACAAGTATTTAATCTCACTAATATATCCCCTGCATGGGTATCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAGGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGATGGGGTCTACCAGTGCTGGGTATCACCACATTCTCCGGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTCAATTTTGAATACCGTAGTCTTGTTTTGCAAGATCCTGCAGCTTCAATGGAAGAGAATGGCAATTGGGATGAGTTTCGACTACAAATGAGGCTTGCTTATTTGCTCTTTGCTAATCAACTGAGCCTTGATGTTATCTCTAGTAAAGTATCACCTAAAGCACTTAAGGAGGCTAGGCAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGGAATTGCATTGAAAAACAAACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGTAAGACTACTGAATATGATGCACATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGTTTGTCACTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTATCTGCTGGGGCAAAGCCAAATTTGGTCACTGATCCTACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATGTGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCGCTGGAAACTAGCACGACTGATCCAGTAAATTCTACAAACCTTACCGAGGACCAGCAGAACCTGAAGGATACGTTGGCAGCTTATCGAACCGCTGCTGATGCAGCAGCCCGCATACATGCTGCATTTAGGGAGCACTCTCTAAAACTGCGAACTAAGGCAGTTGTGTCTTCCAGTCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACCGCGAGACGAGGAAAATGATGGCAGCTGCTGCTTGCATTCAGCATACATTCCGTACATGGAAAACTCGTAAAGAATTTCTCAACATGCGTCGTCAGGcaattaaaattcaaGCTGCTTTCCGGTCCTTTCAAGTGCGGAAGCATTATCGAAAAATTCTTTGGTCTGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAAGGGATTCCGCGGGCTCCAGGTCAAGACCGTCGAAGCAGGAACTGGAGATCAGGATCAGCTAAGTATTGTAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTCGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCGAAGAAAGCACAAGAAGATTACAGGAGGATGAAATTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGAGATAG 3282 0.3985 MLNMNTQKTKISTIVGAITTTIVATTTVAATNTTIMATFIAITTIVAATTIVTTIIIVVTAATSVVVSTITVIITATTAITVTVVATTTTILAIVTLAIITIVVNRKQKGNISKKKKKNRKEQKKECYSAPTRRSFFYLFQPEQTHPSLQSVADFAVREKCSESPKVSVDMAHNLTAQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTVNVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQNFVRRCYWLLNKSMEHIVLVHYRETQELQGSPVTPVNSHSSSVSDPIAPWILSEEIDSGTTTTYAGDMSDNINVRSHELRLHEINTLEWDDLVDANDHDASTVPNGGTVPYFDQQDQILLNGSFSNVASNLSAEIPSFDSLTQPIAGSNSVPYNFSESVNLQTMDNQANPIEQRNHTVSLSGVDSLNTLVNDRLQSQDSFGMWVNHIMSDSPCSVDDPTLESPVSSIHDPYSSLVVDNQQFSLPEQVFNLTNISPAWVSSTEKSKVLVTGFFHRDYMHLSKSNLLCVCGDVSVPAEIVQDGVYQCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRSLVLQDPAASMEENGNWDEFRLQMRLAYLLFANQLSLDVISSKVSPKALKEARQFALKTSFISNSWQYLIKSTEDNKIPFSQAKDALFGIALKNKLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYVRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVNSTNLTEDQQNLKDTLAAYRTAADAAARIHAAFREHSLKLRTKAVVSSSPEAEARKIVAAMKIQHAFRNRETRKMMAAAACIQHTFRTWKTRKEFLNMRRQAIKIQAAFRSFQVRKHYRKILWSVSVVEKAVLRWRLKRKGFRGLQVKTVEAGTGDQDQLSIVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEQLLSTEVDMELKR 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0385 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 184 1093 - -
Ssu6g0385 1093 SMART ANK_2a 775 804 IPR002110 GO:0005515
Ssu6g0385 1093 SMART ANK_2a 814 843 IPR002110 GO:0005515
Ssu6g0385 1093 ProSiteProfiles IQ motif profile. 1044 1072 IPR000048 GO:0005515
Ssu6g0385 1093 Pfam Ankyrin repeats (3 copies) 717 804 IPR002110 GO:0005515
Ssu6g0385 1093 Gene3D - 704 845 IPR036770 -
Ssu6g0385 1093 Coils Coil 1056 1085 - -
Ssu6g0385 1093 Pfam IQ calmodulin-binding motif 964 983 IPR000048 GO:0005515
Ssu6g0385 1093 Gene3D Immunoglobulins 534 628 IPR013783 -
Ssu6g0385 1093 Pfam CG-1 domain 201 314 IPR005559 GO:0003677
Ssu6g0385 1093 ProSiteProfiles Ankyrin repeat profile. 775 807 IPR002110 GO:0005515
Ssu6g0385 1093 SMART iq_5 1042 1064 IPR000048 GO:0005515
Ssu6g0385 1093 SMART iq_5 938 960 IPR000048 GO:0005515
Ssu6g0385 1093 SMART iq_5 961 983 IPR000048 GO:0005515
Ssu6g0385 1093 Coils Coil 1091 1093 - -
Ssu6g0385 1093 ProSiteProfiles IQ motif profile. 962 990 IPR000048 GO:0005515
Ssu6g0385 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 990 IPR027417 -
Ssu6g0385 1093 SUPERFAMILY E set domains 539 626 IPR014756 -
Ssu6g0385 1093 ProSiteProfiles Ankyrin repeat region circular profile. 775 803 - -
Ssu6g0385 1093 SUPERFAMILY Ankyrin repeat 717 839 IPR036770 -
Ssu6g0385 1093 ProSiteProfiles IQ motif profile. 939 968 IPR000048 GO:0005515
Ssu6g0385 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 184 1093 - -
Ssu6g0385 1093 Gene3D - 938 986 - -
Ssu6g0385 1093 SMART CG_1_2 198 316 IPR005559 GO:0003677
Ssu6g0385 1093 ProSiteProfiles CG-1 DNA-binding domain profile. 195 321 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0385 Ssu-Chr6 6160514 6169768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0385 198 1076 CAMTA Transcription Factor Family AT3G16940 55.051 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ssu6g0385 CG-1 3.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0385 K21596 - gmx:100793970 1676.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0385 6 6160514 6169768 Ssu6g0385 6 6160514 6169768 ECH
Ssu6g0385 6 6160514 6169768 Ssu1g1257 1 27772192 27780607 PCT