Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0377 ATGTATATGTACTATGAAGGTTTATTAAGATGTGGGAAAAGTTGTAGACTGAGATGGATCAACTACTTGAGATCAGACGTGAAGAGAGGCAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTCGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGTCGCACGGACAATGAAATAAAGAACTATTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCCTTTAAATGAGTCCCTCCCTCCCATTGACATGGCTGCTTTAAACGTAGCTGCTACTTCCAAGAGACGAACCGGTCGAGGTACAAAAACTCAACCAGCCATGCAAGAGGACAAGAACGCGGCTTTGAGCCAAAACTCCTCACAGAGTAACGCAAGCGAAGTGCCTCAAGTTCAACCAATGCTCAAAAGAAGTGCAACTTCTCAAAGTTTCAATGATGAGGAGAACATAACAGATTATAGTTTGGATGCTTATTGTGAGATGGGGGACAACATATATGGCACAACTGCCTCATGCCCCAGCATGGAAGAAATTGAGGCCTCGGGACCTTATCAATGGTTAgattatgaaattatgaaacttAGTCACATGTTTGAGAATGGGGTGCTCGTAAACCAAGGTGGGATTGTAACCAATAATGAAGAGTGGCTTAGCAATAACTATGGACTAGCGGGAGAGGAGATAATAATGGGAGCAAATGAGGAAAGCAAAAGTGGTGGTTGGAGCTCATCAAATGCAGAAAGTGGAGAGTGGAACACTAGCTGTTCGTCAGTGAATTCTGTCTATGACTATCATCAGTGGCCGGATATGCATTTAGAAGGTAGTGTTCAATCCTATAATCCTTGGGATCTTTGTGAAGAAAACCAGAACGTGGCTTGCTTTTGGGGTACTAGCAATAGTGAAGGAAATGGCTTTTATCAGTGA 951 0.4206 MYMYYEGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKPLNESLPPIDMAALNVAATSKRRTGRGTKTQPAMQEDKNAALSQNSSQSNASEVPQVQPMLKRSATSQSFNDEENITDYSLDAYCEMGDNIYGTTASCPSMEEIEASGPYQWLDYEIMKLSHMFENGVLVNQGGIVTNNEEWLSNNYGLAGEEIIMGANEESKSGGWSSSNAESGEWNTSCSSVNSVYDYHQWPDMHLEGSVQSYNPWDLCEENQNVACFWGTSNSEGNGFYQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0377 316 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Ssu6g0377 316 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Ssu6g0377 316 CDD SANT 33 74 IPR001005 -
Ssu6g0377 316 PANTHER MYB TRANSCRIPTION FACTOR 7 277 - -
Ssu6g0377 316 SUPERFAMILY Homeodomain-like 10 79 IPR009057 -
Ssu6g0377 316 Gene3D - 33 78 - -
Ssu6g0377 316 SMART sant 28 76 IPR001005 -
Ssu6g0377 316 MobiDBLite consensus disorder prediction 104 140 - -
Ssu6g0377 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Ssu6g0377 316 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 277 - -
Ssu6g0377 316 MobiDBLite consensus disorder prediction 103 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0377 Ssu-Chr6 5988486 5990846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0377 7 113 MYB Transcription Factor Family AT2G47460 64.286 3.68e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g0377 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0377 K09422 - gmx:100795019 506.138