Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0376 ATGCATCATCCGGAATCAGGTTTATTGAATTCTGCTTTGAAAATGAGAGTTGAGAAAGAAGGGGCAAAAAATGAAGGTGGACACAACGTTGGTGGTTTTTTCCACTTGTTTGACTGGACCTCAAAATCTCGTAAGAAATTGTTTGCAACCAAGTCAGATTTGCCAGAGTCCTTGAAACAGAGAAGAAAAGTTGACGGCAACTTGACAACAATGCTGCCCTATCTGGtggatgaagatgatgaaattggAGTAGAGGAAAGTATTAGAGAAAGTGGTGATCATAGTTATGCTTCATCTGTTATAGATGATGAAGTTTGTGGAACAAAGGCCCCTGGTGTAGTTGCCAGGCTTATGGGATTAGATTCATTGCCCTCTTCCAGTTTTCCTGATCCATATTCTACTCCATACTTTGACAGCCAATCTCTTCAAGATGTGCAGTACTGGAGGACAAAACTCAATCATCTGCATGACCATCAGACCCTATATTCTGGAAAGTTGATTGAAAAGGTGGAGGGATCTTCTAGGAACTTCATGGAGGCAAAGCCTCAACAGACCCGTAGTAGGCCAATTGAAAAGTTTCAAACAGAAGTAATGCCTCCCAAATCAGCTAAATCCATTCCCCTTACACACCATAAACTTTTGTCCCCAATTAAGAGTCCTGGCTTTGTTCCAACAAATAATGCTACTTATATAATGGAGGCTGCTGCAAGAATTATTGAACCTGGCCCTCAAGCTACTACAAAGGCTAAAACACCTCTGGTAGCATCATCAACAGTATCATCGAGAATTAGAGATCTTAAAGAAAAAGTGGAGGCTTCAACAAAAGGACCTCTAATTGGGCCATCTTCACTGACTTCTAAAGTTagagatataaaagaaaaaagagaaacttCTCATAGAATTAGCAGGCTTTCTGAACCTTCTCAAAGGTCAACTGAGTCTAATGATGCCAAGTATCTAAATGGACAATCTTCGAACAAAAGTTGGAATGGATCTGTGGATACACCTGTCAGATCATCTACTCAAGTAGAAGAAGATTATCCGTTGAAAAATAAAGGGAAGTCTATTTCACTTGCAATCCAAGCAAAAGTGAATGTTCAAAGAAGGGAAGGCTTGAGTCTTAGTAGTGGAAAAAGTTTGGTGGAGCAGAAAGAACAATGTGAGATTAAAACCCCCCAGCAGCCTCTGAAGGctaatgttcaaaaaaatttgccTAAGAAATCCTCTGGTCAAGATGCTTCTGGTGTTCTCAGGCAGAATAATCTGAAACAGAATTGTTCAATGGATAGAGACAAACTACCATCAAAGCCATTGGTTTCCAATTCACACAGTAGAAAAGTTCTGACTGGGGATTCCTCTTGTGGACGTCATAGAAGCTCTAGTAGTAAGTCGATTGCAAAATCTAAGGTTGGGCCCAAAAAATCATCCATGCAGGTGACAGATAGTGAAAAGGAAGTTTTATATACCCGTACAAACAATTTCCCTAGGAAGAAGAGGTCCACAGACAGGGACTGGAATGATAGGGTTGTTGATAATTTGTTCATTGACAAAGCTCAGAAGCCTGTTCAGTCTAATGTACTTAGTAATAAACACCATGATGGGGCTGAAGAAGTCAAAAAGAAAGACATGGATGTAGTTTCCTTCACATTTACCACGCCATTGACAAGAAGTAATTCTGGTTTTGACACATCTGGAAAAAATGGCCTGAAGACTAGCCTTTCCTTGGATCAGCATATTAGAAGAGTGTTGCTTGACACTGACACTGATAGCACAAGGTCTCCAGTGGCATACAATGATATTGGTGGTGATGCCTTAGGTATCCTTTTGGATCAGAAGTTGAGGGAACTAACATGTAGAGTTGAGAACTCTTGCGATGACTCCTTCGAAGCAAGGTCACTTTCCAGCACTGTACCAAAATCAAAAGATCTGGTACCCAACCTTAATTCCGTTAACTTCATTCCACGGTTGCAACAGAAGAAAGACCAAGACGTGATATTGACAGATAAGTTATTCAGTAGCCATGAACGTGATTCCTTCACTCGTCTTCCAGAATTATCATCCAAACATAGACTTTGGGTTGATAAGATGGAGGAGTGTAAGATCAATCCTATGGAAGCAGAGTTATTCAATTCTGGACAGCCAAGTCCAATGTCTGTTCTTGACCCTTCCCTTTCAACTGAAAGCTGTGAATCTCTATTCAGTACAAATGCCGTCAGTTCAGAAGATCAAAGCAGAAGGAAGCAAGTTGTGGGCTCAGCATCAACTTGGACCAAACACGCAAGTACATGCTCTCAAATGAAGTTTGGACGATCAAGTACATGGGAGTTGGACTATGTGAATGATATATTGTGTAATGTGGAGTTGATGTACATGGACTTTGCTCTTGGTAGAGCTCGTGACATTGTAAACCCTCATCTGTTCAACCAGTTGGAAAATAGAAGGGGAAGAAGGTTTGAGGGTGATGGTGGTGAGTGTAGGATGAGAAGGAAgattatatttgattgtgtGGGTGAGTGTTTGGACTTAAGATGCAGGCGTTATGTTGGTGGGGGGTACAAAATGTGGGCTAAAGGGGTTGCAATGGTGAGAAGAAATGAATGGTTGGCAAGGGAAGTGTACAAGGAAATTTCAAGTTGGAGGGATACGGGGGATTCATTGGTAGATGAGCTCGTAGATAGGGACATGAGCATCCAACATGGACGATGGCTAGATTTTGAGGTTGATACTTTTGAACTTGGTGCAGTGGTTGAAGaccaaatatttaattctttagtAGATGACTTCGTGGCTGAAATCCTGCAATTATAA 2808 0.3992 MHHPESGLLNSALKMRVEKEGAKNEGGHNVGGFFHLFDWTSKSRKKLFATKSDLPESLKQRRKVDGNLTTMLPYLVDEDDEIGVEESIRESGDHSYASSVIDDEVCGTKAPGVVARLMGLDSLPSSSFPDPYSTPYFDSQSLQDVQYWRTKLNHLHDHQTLYSGKLIEKVEGSSRNFMEAKPQQTRSRPIEKFQTEVMPPKSAKSIPLTHHKLLSPIKSPGFVPTNNATYIMEAAARIIEPGPQATTKAKTPLVASSTVSSRIRDLKEKVEASTKGPLIGPSSLTSKVRDIKEKRETSHRISRLSEPSQRSTESNDAKYLNGQSSNKSWNGSVDTPVRSSTQVEEDYPLKNKGKSISLAIQAKVNVQRREGLSLSSGKSLVEQKEQCEIKTPQQPLKANVQKNLPKKSSGQDASGVLRQNNLKQNCSMDRDKLPSKPLVSNSHSRKVLTGDSSCGRHRSSSSKSIAKSKVGPKKSSMQVTDSEKEVLYTRTNNFPRKKRSTDRDWNDRVVDNLFIDKAQKPVQSNVLSNKHHDGAEEVKKKDMDVVSFTFTTPLTRSNSGFDTSGKNGLKTSLSLDQHIRRVLLDTDTDSTRSPVAYNDIGGDALGILLDQKLRELTCRVENSCDDSFEARSLSSTVPKSKDLVPNLNSVNFIPRLQQKKDQDVILTDKLFSSHERDSFTRLPELSSKHRLWVDKMEECKINPMEAELFNSGQPSPMSVLDPSLSTESCESLFSTNAVSSEDQSRRKQVVGSASTWTKHASTCSQMKFGRSSTWELDYVNDILCNVELMYMDFALGRARDIVNPHLFNQLENRRGRRFEGDGGECRMRRKIIFDCVGECLDLRCRRYVGGGYKMWAKGVAMVRRNEWLAREVYKEISSWRDTGDSLVDELVDRDMSIQHGRWLDFEVDTFELGAVVEDQIFNSLVDDFVAEILQL 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0376 935 Pfam DUF761-associated sequence motif 98 128 IPR032795 -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 367 428 - -
Ssu6g0376 935 Pfam Domain of unknown function (DUF4378) 775 927 IPR025486 -
Ssu6g0376 935 PANTHER EXPRESSED PROTEIN 15 933 - -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 304 344 - -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 437 483 - -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 287 303 - -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 367 483 - -
Ssu6g0376 935 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 15 933 - -
Ssu6g0376 935 MobiDBLite consensus disorder prediction 246 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0376 Ssu-Chr6 5980900 5985042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0376 31 933 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 30.205 3.61e-86 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0376 - - gmx:102660038 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0376 6 5980900 5985042 Ssu6g0376 6 5980900 5985042 ECH
Ssu6g0376 6 5980900 5985042 Ssu1g1263 1 27919571 27923665 PCT