Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0374 ATGTCGCTGAGGCCAAATGCGAGGACCGAGGTCCGCCGCAACCGTTACAAGGTGGCCGTGGACGCCGACGAGGGTCGCCGGAGAAGAGAGGACAACATGGTGGAGATCCGCAAGAGCAAGCGCGAAGAGAGCTTGCAGAAGAAGCGTCGCGAAGGCCTCCAAGCTCCGCAACAGTTCCCCGCTCCTCTTCAGACTTCCGTCATCGAAAAGAAGTTAGAGAGTCTTCCTGCCATGGTTGCTGGAGTTTGGTCGGATGACAATAGTCTGCAACTGGAAGCCACCACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCAGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGttTGAGGCTGCTTGGGCTCTCACGAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCTGTTCCTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTTGTGCTCAGCCACGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAGCAGGTGCGACCAGCACTTCCAGCACTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCACTATCATATCTCTCTGATGGTACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGCCAATTGGTGCAGCTCCTCATGCACCCATCTCCGTCAGTGCTGATTCCTGCTCTTCGTACGGCAGGAAATATTGTGACTGGAGATGACATGCAGACTCAGtGTATTATCACTCATGGTGCACTCCCTTGCCTTTTGAACCTGTTGAcacataatcataaaaaaagcATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAGGGAACAAATACAAGCTGTTATTGAAGCTGGTCTGATTGACCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCAGGTGGAACTCATGAGCAGATCAAGTACTTGGTGGGTCAGGGTTGCATAAAGCCTCTTTGTGATCTGCTTGTTTGCCCAGACCCAAGGATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAACCTAGGTAACACAGGAGAAGTCAACTTGTATGCACAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATACTGgttggaagaagaagatgagacACTACCTTCAGGAGATGGTGTTCAACCTGGTTTCAATTTTGGAAACAGTGAGCTTCCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1593 0.4601 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAPQQFPAPLQTSVIEKKLESLPAMVAGVWSDDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGQLVQLLMHPSPSVLIPALRTAGNIVTGDDMQTQCIITHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIDPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTGEVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGVQPGFNFGNSELPVPSGGFNFS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0374 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Ssu6g0374 530 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Ssu6g0374 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 189 231 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 402 442 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 148 188 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 233 272 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 316 357 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 274 314 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 359 399 IPR000225 GO:0005515
Ssu6g0374 530 SMART arm_5 105 146 IPR000225 GO:0005515
Ssu6g0374 530 MobiDBLite consensus disorder prediction 23 54 - -
Ssu6g0374 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Ssu6g0374 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Ssu6g0374 530 Gene3D - 73 496 IPR011989 -
Ssu6g0374 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Ssu6g0374 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Ssu6g0374 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Ssu6g0374 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Ssu6g0374 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Ssu6g0374 530 PANTHER IMPORTIN ALPHA 2 521 - -
Ssu6g0374 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Ssu6g0374 530 Gene3D - 11 50 IPR036975 GO:0006606
Ssu6g0374 530 MobiDBLite consensus disorder prediction 23 50 - -
Ssu6g0374 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0374 Ssu-Chr6 5933057 5936949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0374 131 391 U-box Gene Family AT3G46510 24.904 2.69e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0374 K15042 - gmx:100792804 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0374 6 5933057 5936949 Ssu6g0374 6 5933057 5936949 ECH
Ssu6g0374 6 5933057 5936949 Ssu7g1772 7 36192341 36197635 ECH
Ssu6g0374 6 5933057 5936949 Ssu4g0421 4 6834420 6839858 ECH
Ssu6g0374 6 5933057 5936949 Ssu1g1265 1 28047018 28050954 PCT