Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0371 ATGTATGATGTGATCAGAACTTATGATTCCAATTACTGGGCTGAGGTTACTATTGCAAACCATAACCCTCTTGGAAGGCTTGACAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTTATATATTCAATGAAAGGGGCTTATCCTGCCGTTGTGGATGCTTCTGATTGTGTTTTTGGGAAGCAAGGTACATTCTACAGGGATCTTGACTTTGCCAATGTGTTGAATTGTGAGAGAAGGCCGACCATAATTGATCTCCCTCCCACCAAGTTCAATGATTCTGACCTTGGGAAGATTCCCTTTTGCTGCCGGAATGGTACTATTTTGCCGCCATCGATGGATCCTAGCCTGTCGGCTTCGAGATTCCAAATACAGGTCTTCAAGATGCCGCCGACGCTTAACCGCTCCCAGCTTTTGCCACCACAGAACTGGAAGATAAGTGGTACGCTCAACCCTGACTATAAATGTGGCCCTCCTGTGCGAGTGAGTCCTAGCGAAAATCCTGATCCATCCGGCTTACCGTCGAACAAAACTGTGATGGCCAGTTGGCAGGTTGTGTGCAACATAACAACTGCCAAGGGAACATCAAGTAAATGCTGTGTCTCGTTTTCAGCTTATTACAATGATTCTGTTATTCCGTGCAAAACATGTGCTTGTGGATGCCCCAAGAACACAGAAAGAACATGTAGCACTACTGCTCCAGCAATGTGGCTTCCACCAGAGGCACTTCTTGTTCCTTTCGAGAACCGAACTGCCAAGGCTGTTGCTTGGGCGAGTCTGAAACATCTAAAGGTGCCAAACCCACTGCCGTGTAGTGATAACTGTGGCGTGAGCATCAACTGGCATTTGTACACTGACTACAATAAAGGATGGAGTGCCAGGGTCACACTTTTTAACTGGGGTGAGACTAATTTTGCAGACTGGTTTACTGCGGTACAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAACTCTTCTAGATGGTGTAAACAATACAATAATCATGCAAGGTTTGCCAGGATTGAACTACCTTGTAGCAGAAACTGATGGAGCTGACCCTGTGAGAGATCCTAGGGTGCCTGGTAAACAACAGTCAGTGATCTCATTCAGTAAGAAAACCACTCCTGGAATCAATGTGGCTCGTGGAGATGGGTTTCCCACTAAAGTATTTTTCAATGGGGAGGAATGCTCTCTTCCTTCAGTGTATCCAAGCAGTGGTTTCAGGAATGGTTTTTCCTTGGCTACTTCGATGCTTTTAACACTGTTGCTGATCCTCTTGATGCGGTAA 1308 0.4564 MYDVIRTYDSNYWAEVTIANHNPLGRLDNWRLSWDWMNDEFIYSMKGAYPAVVDASDCVFGKQGTFYRDLDFANVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSLSASRFQIQVFKMPPTLNRSQLLPPQNWKISGTLNPDYKCGPPVRVSPSENPDPSGLPSNKTVMASWQVVCNITTAKGTSSKCCVSFSAYYNDSVIPCKTCACGCPKNTERTCSTTAPAMWLPPEALLVPFENRTAKAVAWASLKHLKVPNPLPCSDNCGVSINWHLYTDYNKGWSARVTLFNWGETNFADWFTAVQMDKAAAGFEKMYSFNATLLDGVNNTIIMQGLPGLNYLVAETDGADPVRDPRVPGKQQSVISFSKKTTPGINVARGDGFPTKVFFNGEECSLPSVYPSSGFRNGFSLATSMLLTLLLILLMR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0371 435 Pfam COBRA-like protein 12 191 IPR006918 GO:0010215|GO:0031225
Ssu6g0371 435 PIRSF COBRA 1 435 IPR006918 GO:0010215|GO:0031225
Ssu6g0371 435 PANTHER COBRA-LIKE PROTEIN 7 1 434 - -
Ssu6g0371 435 PANTHER COBRA-LIKE PROTEIN 7 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0371 Ssu-Chr6 5895268 5896575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0371 1 420 COBRA Gene Family AT4G16120 71.765 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0371 - - gmx:100814396 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0371 6 5895268 5896575 Ssu6g0371 6 5895268 5896575 ECH