Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0370 ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACGGTTACTTCGAGCGCGGTTATGAAATCCGGCGACGCCGTCTCCGAGCAGTTTCCGGCGGGTCTCCGGGTTCTGGTGGTGGACGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACGAAATGCAATCGAGCAGAGACCGCGCTTTCTCTTCTCAGAGAGAACAAGAATGGCTTTGACATTGTTATAAGCGATGTGCATATGCCGGATATGGATGGATTTAAGCTTTTGGAGCACATTGGGTTGGAGATGGACCTTCCGGTTATCATGATGTCTGCAGATGATAGTAAAAGTGTTGTTATGAAGGGTGTGACTCATGGTGCCTGTGATTACCTGATTAAGCCTGTTCGCATTGAGGCTTTGAGGAACATATGGCAACATGTGGTTCGGAAGAGGAAGAACGAGTGGAAAGACGCGGAGCAATCTGGCAGTGCTGAAGAAGGAGATCGGCAACCAAAGGCGTCGGATGAAGCAGATTACTCTTCCTCGGCAAATGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGAAAGAGATGACACGTCGACGTTGAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAACGTTGCAAGCCATCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTCGGCACCCAAGAGGCAACATTTGGGACAATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGCCAACTGCAAAACCTGGTGTACCTATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGTAGTAAACCAATGAACTTGTTGCATGGAATCCCAACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGCAGCATGAATATGCGAGTCAATGCTTCTGCTACACAAGGCAACCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAACCCTGGTCCTCGTGTTCCCAGACTTCCATCATCTTTGGGGCAGCCTACTGGATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAACGGGATTGCTGGTAACAGCAGAGGACCTGCATACAATCATGTTCCACAGAACTCTTCGTTGCTGAGTTTTCCAATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTCCCTCTTGGAAGCACTCCAGGTGTATCCAGTATCACAACAAAAGGCTCCTTTCAGGAGGAAGTTACATCGGGAATTAAAGGATCTGGTGGATTTCCaagttatgatatttttaatgaacTGCACCCCCAGAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAATGCCTCCCACCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTGCATCAAGGATTTTCTTCTACACAACAGACTGGCCAAAGGCGAGAAGCCACTTTGATTGGAAAAGCTATGTTCTCCGTGGGAGAAGGCTTGGAACAAGATAACCTCCAAAATGCTGGTCAACACCTCAATCCGCTTCTTGTTGACAATTCAATAAGGGTCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTATGGGCAGGAAGATCTGATGAGTGCACTTCTAAAACAGCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATACTCTCTGGACAACATTCCTGTCTAG 2040 0.4637 MNLSNGKGSMSTVTSSAVMKSGDAVSEQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKSVVMKGVTHGACDYLIKPVRIEALRNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGTQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTAKPGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSSSKPMNLLHGIPTNMEPKQLANLHQSTQSLGSMNMRVNASATQGNPLLMQMAQSQPRGQMLSENPGPRVPRLPSSLGQPTGSNGISNGLLGRNGIAGNSRGPAYNHVPQNSSLLSFPMNQTSEMSVNNSFPLGSTPGVSSITTKGSFQEEVTSGIKGSGGFPSYDIFNELHPQKSHDWEITNPGLTYNASHHANPLQGNIDVSPSVLVHQGFSSTQQTGQRREATLIGKAMFSVGEGLEQDNLQNAGQHLNPLLVDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPAENEFEFDGYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0370 679 CDD REC_typeB_ARR-like 35 149 - -
Ssu6g0370 679 Gene3D - 210 272 - -
Ssu6g0370 679 MobiDBLite consensus disorder prediction 418 449 - -
Ssu6g0370 679 MobiDBLite consensus disorder prediction 189 210 - -
Ssu6g0370 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 651 IPR045279 GO:0009736
Ssu6g0370 679 Gene3D - 33 169 - -
Ssu6g0370 679 MobiDBLite consensus disorder prediction 155 210 - -
Ssu6g0370 679 SUPERFAMILY CheY-like 32 156 IPR011006 -
Ssu6g0370 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Ssu6g0370 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Ssu6g0370 679 MobiDBLite consensus disorder prediction 155 176 - -
Ssu6g0370 679 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Ssu6g0370 679 PIRSF RR_ARR_type-B 12 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu6g0370 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Ssu6g0370 679 SMART REC_2 33 145 IPR001789 GO:0000160
Ssu6g0370 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Ssu6g0370 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 651 - -
Ssu6g0370 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0370 Ssu-Chr6 5887147 5890633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0370 68 679 Response Regulator Gene Family AT3G16857 51.235 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu6g0370 Response_reg 1.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0370 - K14491 gmx:100814930 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0370 6 5887147 5890633 Ssu6g0370 6 5887147 5890633 ECH