Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0355 ATGGGGAGAATGGGACAAGAATCAGACTCCAAGACCAAGTTGGTATTAGAGATTTGCTCCATCTCCACGCGTTCTGTGGTGTGTGTTCATAGACTTCTCTCAAAACCTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGCCATTCGCAAGCGGTACCATAAACTTGccTTACAAGTTCACCCAGATAAGAATAAACATCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGCAGCAAAGAGAAAAGCATTTGACTTGGAGAGATGTAAGCATTTCTGCTTCGAGTGCAAAAAAATTCCCTATACATCTAGCAATGTCCCCGACAATTCAAGTGGCTCGGGTTTCAAGGCATGGAATATCATCACCAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGACATGAGAGAGAGATTCATGGACGAGGCCAAGGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCACTCTACAATCCGGTTGGCTTTCTACATAGAAGCAAGTCACTGCATAGATCTGAGAAAGAAACCCCAGTTTTCAATCCATCGGACTACTTGTACCAAGGCTACCCTCATCTGAGGGGCCATATTTACAACAATTCTTCAACATTTTGGTACTTGCAGAGAAATAGTGTGCTTCACAATGAAAAGGGAGGAGCGCAGCACGCCTCCCCTGTTTTTGAGGTCAAATCAAGGAGTTTGTTTGCTAGCAAATTTGCTTTTGTCCCATCAAAATGTTAG 804 0.4216 MGRMGQESDSKTKLVLEICSISTRSVVCVHRLLSKPFVDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERCKHFCFECKKIPYTSSNVPDNSSGSGFKAWNIITRSRSFKLWRNIRDMRERFMDEAKVIENCLRTNSMSRKESPLYNPVGFLHRSKSLHRSEKETPVFNPSDYLYQGYPHLRGHIYNNSSTFWYLQRNSVLHNEKGGAQHASPVFEVKSRSLFASKFAFVPSKC 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0355 267 Gene3D DnaJ domain 38 161 IPR036869 -
Ssu6g0355 267 PRINTS DnaJ domain signature 59 74 IPR001623 -
Ssu6g0355 267 PRINTS DnaJ domain signature 41 59 IPR001623 -
Ssu6g0355 267 PRINTS DnaJ domain signature 75 95 IPR001623 -
Ssu6g0355 267 SUPERFAMILY Chaperone J-domain 27 102 IPR036869 -
Ssu6g0355 267 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 253 - -
Ssu6g0355 267 ProSiteProfiles dnaJ domain profile. 39 103 IPR001623 -
Ssu6g0355 267 PANTHER BNAC03G44070D PROTEIN 6 253 - -
Ssu6g0355 267 CDD DnaJ 39 92 IPR001623 -
Ssu6g0355 267 Pfam DnaJ domain 39 100 IPR001623 -
Ssu6g0355 267 ProSitePatterns Nt-dnaJ domain signature. 80 99 IPR018253 -
Ssu6g0355 267 SMART dnaj_3 38 95 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0355 Ssu-Chr6 5669057 5670261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0355 4 100 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.692 7.78e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0355 - - gmx:100801809 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0355 6 5669057 5670261 Ssu6g0355 6 5669057 5670261 ECH