Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0349 aTGTGTGGGGGTGCCATCATTTCTGGTTTCGAAGACGTGAATTTGAAGAGTGGTCGGAAATTGACCACCCAGGACCTCTGGTCTGAGCTTGACACTTTCTCTGACCTCCTTGGTTTCAACGCCACCGCTTCTTCCAAACACCAACCATCCCTCCTCCACCACTCTCAGGATCCAAAGCTCCCTCCGGTTCCGAACAACAAAGtGGTGGCATGTGAGAAGGTGAAGAGGAAAAGAGTGGTTGCAGAAAAGGGTACAGGTAAGAGTGGTGAGAAGGAGGGGAAGGATGGGGGCCGAGTACGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCTGCGGAGATAAGGGACCCACGCAAGGGTGTACGAGTCTGGCTCGGTACTTTCAACACTGATGAAGAAGCCGCTCGAGCTTATGATGAAGCCGCCAAGCGCATCCGTGGAGACAAGGCCAAGCTCAACTTTCCCCAACATACACCCAAGAAGCGCTGTCTTAGCCCCGAGTTGACTCAGCAGTGTTATGAACCCACTTTTACTAAGCCCCAGCAGGGTGAGCAGGATCCTGAGCTGAAGCACCACATCTCCAACCTGGAATCGTTCCTTGGTTTGGAGCATGAACAGCCTCAGGCTCAGCCACTTGGTGAGTGGGACCCGCTCTATACGGACCTGTGGACGCTGGACGACGTCGTTATGCCCAACCGCAACCTCTTCTGA 726 0.5413 MCGGAIISGFEDVNLKSGRKLTTQDLWSELDTFSDLLGFNATASSKHQPSLLHHSQDPKLPPVPNNKVVACEKVKRKRVVAEKGTGKSGEKEGKDGGRVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTDEEAARAYDEAAKRIRGDKAKLNFPQHTPKKRCLSPELTQQCYEPTFTKPQQGEQDPELKHHISNLESFLGLEHEQPQAQPLGEWDPLYTDLWTLDDVVMPNRNLF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0349 241 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Ssu6g0349 241 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Ssu6g0349 241 PANTHER DNA-BINDING DOMAIN 1 171 IPR044808 GO:0003700|GO:0009873
Ssu6g0349 241 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Ssu6g0349 241 PANTHER EREBP TRANSCRIPTION FACTOR 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0349 Ssu-Chr6 5554502 5556811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0349 1 234 AP2-EREBP Transcription Factor Family AT3G16770 42.647 2.16e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g0349 AP2 9.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0349 K09286 - gmx:100817253 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0349 6 5554502 5556811 Ssu1g1291 1 28459045 28460921 PCT