Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0348 ATGAATTCCAACTACGGCCAATCCAACACGCACAAAGCCTCCTCCGTCTCTCTCAACAACTTCAATTTCGATCTCGATCTCGGCATCGGATCCAACCGTCCCAAATCCCTAAACGACCAGAAAAACCCCAAACCTTCCTAttccacaaccaccaccacttCGTATTCCTCTGCGCAACCCAAGAAACAACCCTCATGGACCCACCAACCCGCTCCCACTCAGACCACCACGTTGCCGGGTGGGCCCCCCTCCATGGTCGGAGACATCTTCGGCAAGAGTTGGGGAACCACTCAACCTTCTTCGGGTTCCAACATTGGGATCGTTAACAAGAGTCCCAATCTCTTCGGAGATTTGGTGAATTCTGCTTTGGGCCAGGGTTCCAAGATTGGTGCTACCAACGTTCCTCTCAAAAATGCTCCCTCCAAGGCATCAGCTCCCACACCCAATAAAACATCCTTTTCCATGGGAAACATGGCTGATTCTTTGCCCAAAACTGGTTCCACGCCATCTTCTGGGAGTTTTAGTGTGAATACCAATAAAACCCCCAATCTTGGGGGTCCTTCAATGCGAAGTATGGGTACTGCTGCTGCAACCGGAAGTGGAATGAGTTCTAATAACGAGGATCCGTTTAGTTCTCTGTCTGGTATTGGATCCAAGCAATCTGCTACTCTTAATTCAGCTGCTAAAAGCCAAAAGGTTGATTTGGGGAATGATGGTTTTGGAGATTTTCAAAATGCTTCCAAACCGAGCTCCGCGGCGTTTCCATCAACTGGTTCTGCTGGAATTGATATCAATTTTACTGGATATGCTGCTGCTTCGAATCAGACTCCTGTTCAGGCATCAGGTGGTGGTGATCCAATGGACATGTTTTTCGCATCGGCTTCCTCGGCCTCGGGTGGAGGTGTGGCCTCTGAAGGACAGGATGATTGGGGTTTGGATTCGGAGTTTGGCGGGGGAGGCCATGGGGCGACTACTGAGCTTGAGGGGCTTCCTCCTCCTCCTGCTGGGGTGTCAGGTTCCACAGCCAAAGGCAAGGGGATGGACAATTACAAGCAGGGACAGTTTGCTGATGCTATTAAGTGGCTTTCCTGGGCTGTTGTCCTTCTAGAGAAAGCTGGGGATACTGCGGCCACGGTCGAGGTTTTGTCGTGCAGGGCTTCGTGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTGGCAGATTGTACAAAGGTTCTCGAAAATGATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTTTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCCGGTAATAGGATTGCTAGAAGCACCGTTCACCGGTTGGCTAAGATGGCTGATTAG 1386 0.4906 MNSNYGQSNTHKASSVSLNNFNFDLDLGIGSNRPKSLNDQKNPKPSYSTTTTTSYSSAQPKKQPSWTHQPAPTQTTTLPGGPPSMVGDIFGKSWGTTQPSSGSNIGIVNKSPNLFGDLVNSALGQGSKIGATNVPLKNAPSKASAPTPNKTSFSMGNMADSLPKTGSTPSSGSFSVNTNKTPNLGGPSMRSMGTAAATGSGMSSNNEDPFSSLSGIGSKQSATLNSAAKSQKVDLGNDGFGDFQNASKPSSAAFPSTGSAGIDINFTGYAAASNQTPVQASGGGDPMDMFFASASSASGGGVASEGQDDWGLDSEFGGGGHGATTELEGLPPPPAGVSGSTAKGKGMDNYKQGQFADAIKWLSWAVVLLEKAGDTAATVEVLSCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPGNRIARSTVHRLAKMAD 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0348 461 MobiDBLite consensus disorder prediction 91 105 - -
Ssu6g0348 461 MobiDBLite consensus disorder prediction 30 105 - -
Ssu6g0348 461 PANTHER OS03G0340700 PROTEIN 1 461 - -
Ssu6g0348 461 MobiDBLite consensus disorder prediction 132 217 - -
Ssu6g0348 461 Pfam Tetratricopeptide repeat 414 445 IPR019734 GO:0005515
Ssu6g0348 461 MobiDBLite consensus disorder prediction 33 81 - -
Ssu6g0348 461 SMART tpr_5 379 412 IPR019734 GO:0005515
Ssu6g0348 461 SMART tpr_5 339 372 IPR019734 GO:0005515
Ssu6g0348 461 SMART tpr_5 413 446 IPR019734 GO:0005515
Ssu6g0348 461 MobiDBLite consensus disorder prediction 316 342 - -
Ssu6g0348 461 Gene3D Tetratricopeptide repeat domain 339 460 IPR011990 GO:0005515
Ssu6g0348 461 SUPERFAMILY TPR-like 343 451 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0348 354 456 Calmodulin-binding Proteins AT3G25230 32.075 1.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0348 - - pvu:PHAVU_003G107800g 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0348 6 5529552 5532976 Ssu6g0348 6 5529552 5532976 ECH