Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0344 ATGGCAGCTGGATTCGACCGCGTCCacgagaagaagaagaagctcgCCATTCTGAGCGTCTCGTCCGTCCTCCTGGTGGCAATGGTCGCCGCGGTGGCGGTCGGCATAAAAGGCGGCGGCACCGGAGGCGGCGAGGAAGGGGGTGACCACGGGCACGTAAAATCCCACCAGAGGAACGTGCAAGTGATATGCCAATCCACCGAATACAAAGAAGCATGCCAGAAGAGTCTCGAAAAAGCCTCAAACGACAACGCGGACCTGAAGGAGCTTATCATAACCGCGTTCAACGCCACGGCCGAGGAGATCGAAAAGCAAATACAAAACTCAACCCTCTACCACGAGTTGGCCACCAACAACATGACAAAACAAGCCATGGATATTTGCAAAGAAGTCCTAGGTTATGCCGTCGATGATATTCACCGTTCCGTTAAGACGTTGCACAAGTTTGACCTGAACAAATTGAGCGATTATGCCTTTGACCTCAAAGTTTGGCTGGCGGGTACCCTTGCCCACCAACACACATGTTTGCATGGGTTTGAGAACACGACCACCGAGGCTGGCCAAATCATGGCTCAGGTTCTCAACGCCTCGTTGGAGCTCAGCAACAACGCGTTGGACATAGTGAACGGTGTTTCGACTCTCTTCAAGGGTCTTAACTTGAGTTCCTTTACCGCCAACAACAGGAAGCTTCTCTCGGAAGCTCCTTTGGTGGATGGGTTCCCTTCTTGGGTGAGTGAAGGGCAGAGAAGGCTCCTCCAGGCTGCTGTCCCCCCCAATCCCAACGTGGTTGTGGCTCAGGATGGGAGTGGAATGTGCAACACAATCGAAGAGGCTCTTCAACGCGTTCCTAGAAGGAACAGTGCTCCTTTTGTGATTTACATCAAGGCCGGTATCTACCAGGAGTATGTTAACTTGGACAAGCACATGACCCATGTCATCATGATCGGAGATGGCCCCACCAAGACCAGAATCACCGGCAACAAAAACTACGTCGATGGAGTCCAAACCTACAACTCCGCAACCGTCGGTGTGAACGCTGAATACTTCACGGCCAAAGACATTGGGTTCGAGAACACGGCAGGACCGGAGAAGCACCAAGCGGTGGCACTTCGGGTAACAGCAGACAAGGCGGTGCTTTACAACTGCCACATGGACGCGTTCCAAGACACCCTGTACGTGCAATCCCAGCGGCAGTTCTACCGCGACTGCACGGTGACGGGCACGATCGACTTCGTGTTCGGCGACGCGGTGGGAGTGTTCCAGAACTGCAAGTTCATCGTGAGGAAGCCCTTGGGCAACCAGCAATGCATGGTCACGGCGGGTGGAAGGAGCAAGGCCGACAGCCCCAGCGCACTGGTTTTCCAGAATTGCATCTTCACGGGCGAGCCCGGCGTGTTTGAATTGAATCCCAAAGTTGCGTACCTGGGAAGGCCCTGGAGGGATTTCGCCAAGGTGGTCATCATGGACTCTCAAATCGATGACATCTTTTTGCCAGAAGGGTACATGCCGTGGATGGGAAACTTGTACACAGAAACAAGCACCTATTACGAGTTCAACAACAGGGGTCCTGGCGCTGTTACCACGGGTAGAGTCACATGGCCTGGCGTCAAGCTGATTACTCCTGTTGAGGCTAATGATTACTACCCAGGCAAGTTCTTTGAGATCGCTAATTCCGCTGAGGGTGATACTTGGATCGTCAGCTCTGGGGTACCCTACTCCCTTGGACCCCTTGCGGCCCCCGCGTTGCCCGTTGATCCCATTCCCGCAGCTTAA 1773 0.5336 MAAGFDRVHEKKKKLAILSVSSVLLVAMVAAVAVGIKGGGTGGGEEGGDHGHVKSHQRNVQVICQSTEYKEACQKSLEKASNDNADLKELIITAFNATAEEIEKQIQNSTLYHELATNNMTKQAMDICKEVLGYAVDDIHRSVKTLHKFDLNKLSDYAFDLKVWLAGTLAHQHTCLHGFENTTTEAGQIMAQVLNASLELSNNALDIVNGVSTLFKGLNLSSFTANNRKLLSEAPLVDGFPSWVSEGQRRLLQAAVPPNPNVVVAQDGSGMCNTIEEALQRVPRRNSAPFVIYIKAGIYQEYVNLDKHMTHVIMIGDGPTKTRITGNKNYVDGVQTYNSATVGVNAEYFTAKDIGFENTAGPEKHQAVALRVTADKAVLYNCHMDAFQDTLYVQSQRQFYRDCTVTGTIDFVFGDAVGVFQNCKFIVRKPLGNQQCMVTAGGRSKADSPSALVFQNCIFTGEPGVFELNPKVAYLGRPWRDFAKVVIMDSQIDDIFLPEGYMPWMGNLYTETSTYYEFNNRGPGAVTTGRVTWPGVKLITPVEANDYYPGKFFEIANSAEGDTWIVSSGVPYSLGPLAAPALPVDPIPAA 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0344 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 209 IPR035513 -
Ssu6g0344 590 SMART PMEI_2 55 207 IPR006501 GO:0004857
Ssu6g0344 590 CDD PMEI-like_3 63 213 - -
Ssu6g0344 590 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Ssu6g0344 590 PANTHER PECTINESTERASE 8 579 - -
Ssu6g0344 590 Gene3D - 259 577 IPR012334 -
Ssu6g0344 590 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857
Ssu6g0344 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Ssu6g0344 590 Pfam Plant invertase/pectin methylesterase inhibitor 60 207 IPR006501 GO:0004857
Ssu6g0344 590 SUPERFAMILY Pectin lyase-like 256 574 IPR011050 -
Ssu6g0344 590 Pfam Pectinesterase 261 553 IPR000070 GO:0030599|GO:0042545
Ssu6g0344 590 PANTHER PECTINESTERASE 8 579 - -
Ssu6g0344 590 Coils Coil 70 90 - -
Ssu6g0344 590 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0344 Ssu-Chr6 5503375 5505672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0344 1 578 Carbohydrate Esterase AT3G05610 42.784 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0344 K01051 - gmx:100800194 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0344 6 5503375 5505672 Ssu6g0344 6 5503375 5505672 ECH
Ssu6g0344 6 5503375 5505672 Ssu1g1304 1 28843840 28870531 PCT