Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0343 ATGGCAAGGAATTCGAAATCGAAGAAAGAGGACTACGCGCTCAGCGGCAGGATAATGCTAATCGCCATTGTGGTTCTCTTCATCGTCATAATCATAATGCTCTGCCTCCACGTCTACGTCCGGTGGCGCCTCGTACGCGCTCGCCGCCAGCAACACCTCCGCCGCAGCAACCGCCCGCAGTTCGTGTTCTACATGGACCCCGCGGCCTCCATTGCCCTCACCAGGCGCGGCCTCCACCCCTCCGTGATCTCCACGCTCCCCGTCTTCACCTTCTCCCCCGCGACGACCAACCCAACGGAATGCGCGGTGTGCTTGTCGGAGTTCGAGGACGGGGAAACGGGCCGGGTCTTACCCAAATGCAACCACAGTTTCCACACCGAATGCATCGACATGTGGTTCCAGTCCCACGCCACGTGTCCGCTTTGCAGGGCCGCCGTGGAGGCCCAACCCGAGGCCAGGCCCGATGAGACTGTCATTGCGTGCGAGCCCGAACCGGTTCGGGATGAGGTGGACCGGTCTGGACCTGTGGGGGAATCTTCTTCTGCGTTGCGTGTTGAGGTGGTGGGAAGGAACGAGAGCTTTGGGCGCGAGTCTGGGTGTGAGTCGGGGTCGTCGTTTCGTTCGCCGGTGAGTCGGATGCTGTCGTTTAAGAGTATTCTCGGCAGAGAGAAGAAGGGAAGCGTTTCGGGGTGTGTGGTGGGAGGGTGCAGCTCCATGACCGAGTTGGACGCAGAACGGGCCGGGAGAGTGTGA 753 0.6109 MARNSKSKKEDYALSGRIMLIAIVVLFIVIIIMLCLHVYVRWRLVRARRQQHLRRSNRPQFVFYMDPAASIALTRRGLHPSVISTLPVFTFSPATTNPTECAVCLSEFEDGETGRVLPKCNHSFHTECIDMWFQSHATCPLCRAAVEAQPEARPDETVIACEPEPVRDEVDRSGPVGESSSALRVEVVGRNESFGRESGCESGSSFRSPVSRMLSFKSILGREKKGSVSGCVVGGCSSMTELDAERAGRV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0343 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 194 - -
Ssu6g0343 250 PANTHER RING-H2 FINGER PROTEIN ATL64 7 194 - -
Ssu6g0343 250 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Ssu6g0343 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 149 IPR013083 -
Ssu6g0343 250 Pfam Ring finger domain 100 143 IPR001841 -
Ssu6g0343 250 SUPERFAMILY RING/U-box 84 157 - -
Ssu6g0343 250 CDD RING-H2_EL5_like 100 143 - -
Ssu6g0343 250 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0343 Ssu-Chr6 5491140 5491892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0343 4 248 Rapid Response to Elicitors AT3G16720 44.097 5.11e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0343 - - gmx:100800859 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0343 6 5491140 5491892 Ssu6g0343 6 5491140 5491892 ECH
Ssu6g0343 6 5491140 5491892 Ssu1g1306 1 28898087 28898956 PCT