LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0327	ATGGAGGAGCCTCAGTGCCGCGAACATCCCAAAACCAAAATCACGACCATTCCGCCGTCGCAGCACTCCGACGGCGCCACCGAGTTGCGCGGTGTCGATTGCAACCTGGCTTCCCTCTGCGAGCATGTCCAAATCGAAGGCTTCAATTCGGGTTCCTTCTCCGACATCGTCGTCAATGCCATGGGTTCCACTTATCGCCTCCATCGTCTTATCCTTTCCCGCAGTTCGTATTTCAGGAACATGCTTCATGGGCCTTGGAAAGAAGCCAGTGCCCCTGTTGTGACTCTGCATGTTGATGATAAGAATGTTAATGACGAGGCAATTGCAATGGCTTTGGCATATCTATATGGGCACCACCCTAAGCTTAATGATAATAATGCATTTCGTGTTCTCGCTGCGGCTTCCTTTCTTGACCTTCAGGATTTATGTGGAATTTGTACAGATTTCATTATATCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGCTGGGGCTACCTCTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTGCATGCATTGCTGACTTCTAATGATCTGTGGATACCGAATGAAGAGAAACGgTTTGAATTGGCTTTGCACACATTCCTGGCAAAAAGTGCTCACTGCAAGGTCGAACATCCTGCACATGGAATTTCTGGTTCTGAGTCTGCAACTGGTATTCATTCTGATTCTGGTGGCACTAAGGGAAAAAGTGTAACTGATAGCTGCACTAATAAGAGGTTGGAAACTGACATGGGGAAAATGAGTCTTAAATGTGATCTAAAGGACCCTAGCACTCCTAGTCTTCTGGTTGAGCTCGCTGACTCAGTGGCAGACTTCAATGAAGGGGTTTCTGATTCCAATGAACAGGTTCAACAAGCTTCATATGTTAGTTCACCAAACCAGAATCCAGGATATTCTTGTGACATGGAAGGACCATCATTGGGTAATTCATTGTCTGATACAGATGGGATGAGAACATCATGTTATGTTGAGATGCCCCTTGGTGTTGGAGCAACTGGTATGGGAGCCTCTGGAGTGGGTATTGAAGGACCATCAGAAGGACCTTGCTACCATTTAGAGAACAATAGTTGGTTAGTTGGGGATCAATCAAGACATTGCTTTTCATCGAATTCTTGTAATGAGCTCACATCCAGTGATTGGGGAAGATACGGAACACCTTTATTTTCATGGAATGGCCAGGTTGTTGGTAGAAGACAGCTTAAAGCTCACCCCAGAGGAAACTACAGAGGTCATGGAGATGAATATGAtgcatttttcaatatatttgaaGGGGGTTCCCTTTTGTATTGCAATATGTCTTTTGATGCACTTCTAAATGTCAGAAAGCAACTCGAAGAATTAGGTTTCCCTTGCAAAGCTGTAAACGATGGTCTTTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAAATTGCTGCTGATACATGCAAAGTTTGCTCCCTCATGAGTATGGCTTGCACTTGTCAGAAGCAATTTGCATTTTCACATGGAGCTTCTACCACTGGATCTTACGTGCAAGAACATAATCAGAACATTATGCCTGGCAATGTGGGAAATATATATGTTGCTGAATCTTCTCAAGGCGAAAGAAATGGCCTTTTTAGACCTGTACGAGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCTGTGGAACTACATTTGTTCCAGCAGCTGCTTCGCCTCCTACACGTTTTGTCTTTTCTCGTGTACCATTTGGTGTTGGCAACAGAAACTATCCTCAGTCTGCAGCCAATGATGATTCAGAGACACGTGCTGACCTCAATGGAGACCTGTCTGGAGATGGGTTGACAGCTTTAGTTGGGCTAAGCGTGGGAGGGAGTAATGGAACAAATGTACATACAGAGCTAACACAAAGGGGATATGAAATGGGCTTGCAAAGCAGCATGTCTGGAACTAGTGCTGGAGGTGCAAGTACTGGTGGCATTCCCATGCAGATGTTAGAGACACCAGAGCATACAATTGGTATAGAATGGGGCAATGTCAACAGTTCTTCTATATCACTGGATTTGAAAACACCTTTAAGTCATTTCCCCCCTTTTCGCTTTGGTGTACGTTTCGAGGATGTGCATAGGCTTGGTGATGGCCAGGTCAAGCATTCTCTAGAAGTTTTCTATGCCGGTTCTTTGTGGAAGGTCAGTGTACAAGCTTTTAATGATGAAGACCCCCAGGGACGGCGTACCCTTGGGTTGTTTCTTCACCGTCGGAAGGCAGAGATAACTGATATACATAGAAAGGTACATATGTATGTTGACTCACGTGAAAAGGTGACTGCACGCTACCAGTTGACTGTCCCATCCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAGGGATGGGGTTGGCGAACTGCTCTGCTATTTGATGAGCTTGCTCATCTTCTCCAAAACGGCGCCCTAAGGGTCATTGCTGTAGTGCAGCTTGTTTGA	2601	0.4502	MEEPQCREHPKTKITTIPPSQHSDGATELRGVDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYRLHRLILSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCGICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPNEEKRFELALHTFLAKSAHCKVEHPAHGISGSESATGIHSDSGGTKGKSVTDSCTNKRLETDMGKMSLKCDLKDPSTPSLLVELADSVADFNEGVSDSNEQVQQASYVSSPNQNPGYSCDMEGPSLGNSLSDTDGMRTSCYVEMPLGVGATGMGASGVGIEGPSEGPCYHLENNSWLVGDQSRHCFSSNSCNELTSSDWGRYGTPLFSWNGQVVGRRQLKAHPRGNYRGHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMSMACTCQKQFAFSHGASTTGSYVQEHNQNIMPGNVGNIYVAESSQGERNGLFRPVRVHVRGAIDGLAGIGCGTTFVPAAASPPTRFVFSRVPFGVGNRNYPQSAANDDSETRADLNGDLSGDGLTALVGLSVGGSNGTNVHTELTQRGYEMGLQSSMSGTSAGGASTGGIPMQMLETPEHTIGIEWGNVNSSSISLDLKTPLSHFPPFRFGVRFEDVHRLGDGQVKHSLEVFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLTVPSKREMMVFGSFKQTGTLLPKAPKGWGWRTALLFDELAHLLQNGALRVIAVVQLV	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g0327	866	Pfam	BTB/POZ domain	48	152	IPR000210	GO:0005515
	Ssu6g0327	866	MobiDBLite	consensus disorder prediction	1	25	-	-
	Ssu6g0327	866	Gene3D	Potassium Channel Kv1.1; Chain A	26	187	IPR011333	-
	Ssu6g0327	866	MobiDBLite	consensus disorder prediction	245	272	-	-
	Ssu6g0327	866	SMART	BTB_4	54	154	IPR000210	GO:0005515
	Ssu6g0327	866	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	7	866	-	-
	Ssu6g0327	866	SUPERFAMILY	POZ domain	48	152	IPR011333	-
	Ssu6g0327	866	MobiDBLite	consensus disorder prediction	251	270	-	-
	Ssu6g0327	866	ProSiteProfiles	BTB domain profile.	54	124	IPR000210	GO:0005515
	Ssu6g0327	866	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	7	866	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Ssu6g0327		BTB	1.7e-13	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0327	-		-	gmx:100806711	1655.57