Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0323 ATGGAGGATTCGTTAGGGCAAAAATGGAAGCAGCGAGAGTTTGCTTTGGCATCAGTTTCCGACCTCTCTTCGGCTTCTTCTTCCGCTGCGCCGGGAATTGCTCGCTTCGACTCTGACGGTCTCCAATTTCATCAGCAATCTCACCAGATTCCATTCAATGTCGATCCTCGAACTGTTCAGTTATTCAAGTTGAGTCCTGTTCAATCGGTTTGCATGGTGGAAGGAACTGATGTTGGTAAAAAGACATTGTATTCCAAGGGAGTCACTATCCAGTTTAGAAATGAGGAGGAGAGTGCGGCCTTCCATTGTGTAGTCCAACAATGGAAGAAGGAAGTCAATGCTCAAGAAGGAAATGGACGAAATGGAACTATTACAACTTCTAAAAGCAAATTTGATGAAAAGATAGAGTCATCATCtgcaaaaatgtattttcattattatggaCAACTTCTGCATCAGCAAAATATGCTGCAGGACTATGTGCGGACAGGAACCTATCATGCTGCTGTTATTGAGAACCGTGCTGATTTCATTGGTCGTGTTGTAGTTGATGTGGGTGCTGGTAGCggtattttgtcattatttgcTGCTCAGGCTGGTGCAAAACATGTTTATGCAGTGGAAGCATCTGAAATGGCAGAATATGCACGGAAACTTATAGCTGGAAACCCAACACTGGCTCAACGAATTACAgtgATCAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCAGATATTCTGATCTCTGAGCCCATGGGCACCTTGTTAGTCAATGAAAGAATGTTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTTGTTCCTACTGGGAAAATGTTTCCAGCTGTGGGAAGGATTCACATGGCACCTTTCACTgatgaatatttgtttattgaAATTGCTAATAAGGCCCTGTTTTGGCAGCAGCAAAACTATTATGGTGTTGATTTAACACCCCTACATGGGACTGCATTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGATTGTTAATAGCTCCTCCAATGTTCCATGTGATAGACTTCACCAAAATAAAGGAGGAAGAACTGTATGAAATTGATATTCCTCTAAGATTCATAGCCTCTGTGGGCACCAGAGTGCATGGGTTGGCATGTTGGTTTGATGTGCTGTTCAATGGAAGTACTGTGCAAAGGTGGCTTACCACTGCTCCTGGGTCACCGACAACCCATTGGTACCAATTACGCTGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGACAAGAAATTACTGGCAGGCTTCACTTGATTGCCCATACTGCACAGAgttatacaatatatttaacattGTCAGCTAAAATGTGGGGTCCTGGTGCTGAACAAGGAGGAATTCTTCAAACATCATCCTGTAAACTTGATCTGAAAGAACCCTACTATAGAATGTCTCAACCGCAAGCTTATGCATTAGCTCAAGATCAGCAACCTCAACCACTTATACAAACACAGGATATACACATCCAATCTCAGGATTTGGATGAACCCGAAATAGTGCAACAGCCTTTGCCTAATTCATGTGCTCAGATTGATTCACTGATGCAGAATGTTTAA 1608 0.4111 MEDSLGQKWKQREFALASVSDLSSASSSAAPGIARFDSDGLQFHQQSHQIPFNVDPRTVQLFKLSPVQSVCMVEGTDVGKKTLYSKGVTIQFRNEEESAAFHCVVQQWKKEVNAQEGNGRNGTITTSKSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPTLAQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPTGKMFPAVGRIHMAPFTDEYLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVIDFTKIKEEELYEIDIPLRFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHTAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALAQDQQPQPLIQTQDIHIQSQDLDEPEIVQQPLPNSCAQIDSLMQNV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0323 535 CDD AdoMet_MTases 182 282 - -
Ssu6g0323 535 Gene3D Vaccinia Virus protein VP39 121 283 IPR029063 -
Ssu6g0323 535 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 1 491 - -
Ssu6g0323 535 Pfam Ribosomal protein L11 methyltransferase (PrmA) 179 252 - -
Ssu6g0323 535 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 136 451 IPR025799 GO:0016274|GO:0018216
Ssu6g0323 535 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 491 IPR025799 GO:0016274|GO:0018216
Ssu6g0323 535 Gene3D - 285 493 - -
Ssu6g0323 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 146 457 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0323 Ssu-Chr6 5144927 5151379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0323 143 433 C2H2 Transcription Factor Family AT3G12270 33.657 1.16e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0323 K05931 - gmx:100780736 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0323 6 5144927 5151379 Ssu6g0323 6 5144927 5151379 ECH
Ssu6g0323 6 5144927 5151379 Ssu1g1333 1 29335250 29347969 PCT