Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0320 atgcagAACGAAGAGGGAAAGCTCACTGAGCTATACGTTCCTAGGAAATGCTCTGCCACTAACAGACTGATAACTGCAAAGGACCATGCCTCGGTTCAGCTTAACATTGGCCATTTGGATGAGAATGGTATCTTTAATGGTCATTTTTCCACATTTGCCCTCTGCGGTTTCGTCCGAGCACAGGGAGATGCTGACAGTGCACTAGATCGGTTGTGGCAGAAGAAGAAAGCAGAAGTTAAGCAACAGTAG 249 0.4538 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQLNIGHLDENGIFNGHFSTFALCGFVRAQGDADSALDRLWQKKKAEVKQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0320 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Ssu6g0320 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Ssu6g0320 82 Gene3D - 1 81 IPR038579 -
Ssu6g0320 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Ssu6g0320 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Ssu6g0320 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0320 Ssu-Chr6 5090878 5091924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0320 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 82.716 2.04e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0320 K02971 - gmx:100817753 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0320 6 5090878 5091924 Ssu6g0320 6 5090878 5091924 ECH
Ssu6g0320 6 5090878 5091924 Ssu1g1338 1 29375297 29375669 PCT