Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0317 ATGCTTAGTCCTGAAGGAGaacttaaaataagttttgGCTATAAATGCAATGGCAATAGAGGTATTCCTTGTGAGGTTGCCAGTGGCTACAAAATCCTTCCTGGAGTACATAGAACAAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCAAATGCTACACTTGCCAACACAAACATCTGCAATGGTAAGATAGGAGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTACAAAGTTGGACATACTATCATCTTCCCTCCCGAATAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTGCAAGTGATATCCTTGAATATGACTCTTGCACATTAAAATCCATGAGTGATCCTTCCAGAAGTGAAGGTTTTCTTAATGCTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGAAGAGATGCAGCTGACTTTCTGGCTGGTACCCTGTATGACACCATCATATCTTactttaataagttaattgaggAATTGGAGCTGGGTTCCATCGAAGCTTATAATGATGGGGATTTGGGTGGATCCCTGCAATATAATTTAGATGATAGTCTTATTTATCACGAAGATCAATCTCTGTCAAGATTTAAGGGAATCAATGATTCTAATCATGGTTGTTTTGCAAAGGGCAGTTCATCTACTAAGTCAGAAACATCACGTGATTCATTTTCACATGGGGTACTTGATATCCTCCAACGTGCTATTAGTCAGGCTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCTGATTTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTAGGTGACAGCAGAGCAGTATTGGCAACATGCAGTACAGGTGAACGAATGAATAAGAGTGAGAGACTCAAGGCTATACAGCTTACAGATAATCATACTGTTGAAAATGAAGTTGAAAGAACTAGACTTCTGGCTGATCATCCTGATGATCCCAAGATCATTATAGCAGGAAAAGTGAAAGGGAAACTAAAGGTTACTCGTGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGCAATCTTACAAGCCCACCGTATATATCTACTCAACCATCACTAAACGTCCATAGAATCTCAAATTCTGATCAATTTGTTATAGTAGGGAGCGATGGTTTGTTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTTGTAGAGTCTCATATCTTGAGAAATCCTTTGGGAGATCCAGCAAAGTTTCTCATAGAACAGCTTGTTGCTAGAGCAGCTGATTCTGCCGGTCTTAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGAAGGAAGTACCATGATGACGTGACCGTAATTGTGATCATGCTTGGGATGAATCAGCGAACTTCAAAGGCATCAACTTGCATTTAA 1575 0.3956 MLSPEGELKISFGYKCNGNRGIPCEVASGYKILPGVHRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLTKLDILSSSLPNSLSYLSCSPSTASDILEYDSCTLKSMSDPSRSEGFLNAKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFNKLIEELELGSIEAYNDGDLGGSLQYNLDDSLIYHEDQSLSRFKGINDSNHGCFAKGSSSTKSETSRDSFSHGVLDILQRAISQAENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCSTGERMNKSERLKAIQLTDNHTVENEVERTRLLADHPDDPKIIIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLTSPPYISTQPSLNVHRISNSDQFVIVGSDGLFDFFSNDEAVKLVESHILRNPLGDPAKFLIEQLVARAADSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0317 524 Gene3D - 106 520 IPR036457 -
Ssu6g0317 524 Pfam Protein phosphatase 2C 254 474 IPR001932 -
Ssu6g0317 524 PANTHER PROTEIN PHOSPHATASE 2C 2 523 IPR015655 GO:0004722|GO:0006470
Ssu6g0317 524 SUPERFAMILY PP2C-like 150 512 IPR036457 -
Ssu6g0317 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Ssu6g0317 524 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 523 - -
Ssu6g0317 524 SMART PP2C_4 127 509 IPR001932 -
Ssu6g0317 524 CDD PP2Cc 149 509 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0317 Ssu-Chr6 5074195 5076068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0317 4 524 PP2C-type Phosphatase Gene Family AT3G16560 61.860 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0317 - - gmx:100808304 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0317 6 5074195 5076068 Ssu6g0317 6 5074195 5076068 ECH
Ssu6g0317 6 5074195 5076068 Ssu1g1339 1 29416362 29418249 PCT