Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0306 ATGATGCTAGTGTGGCACCTAACTGTCAAATTGCTGCTTGGTAATGGATTTACCCACTCAAACGTTGCTAAGTTGCTTCGGAGATGGCCTATTGTACTGTGTTCTTCTAACTTGTTGAAGACTGTTGAGGAATTGAAGCAAATGGGTTTCGATCCTTCAACTTCATATTTCAGTGTGGCAATGCTTGCCAAAAGGACCGTAAACAAAACCAGATGGGGCGAGAAGATTGACACTTTTAAGAGGTGGGGCTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCTTATTGTATGTTGTCATCCACTGATAAAATAAATGCAGTGATGAGTTTTTGGGTCGAACAGGTGGGTTTCAATTCTGTGGAGCTTGTCAAAGCTCCGGGAATTTTTCTATTGAGTCTCCAGAAGAGGATTGCTCCAAGGGCTTCAGTTGTGCAGTTTCTTATCTCAAAAGGTTGGCTAGAAAAGGATGCAAACTTAATTACACCATTTTTTCTGACTGAGAAGTTGTTCCTGGAAAAGTATGTGAAACGTTTTAAAGAGGATTCTTCTCATCTGTTAAAGTTGTACGAGGAAAAAATGAGTATTGAAAATGATAGGGACAACACTTGTACGTAG 624 0.4071 MMLVWHLTVKLLLGNGFTHSNVAKLLRRWPIVLCSSNLLKTVEELKQMGFDPSTSYFSVAMLAKRTVNKTRWGEKIDTFKRWGWSQEQVLLAFRRQPYCMLSSTDKINAVMSFWVEQVGFNSVELVKAPGIFLLSLQKRIAPRASVVQFLISKGWLEKDANLITPFFLTEKLFLEKYVKRFKEDSSHLLKLYEEKMSIENDRDNTCT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0306 207 PANTHER CGI-12 PROTEIN-RELATED 8 200 IPR003690 GO:0003690|GO:0006355
Ssu6g0306 207 Pfam mTERF 8 160 IPR003690 GO:0003690|GO:0006355
Ssu6g0306 207 SMART mt_12 122 156 IPR003690 GO:0003690|GO:0006355
Ssu6g0306 207 SMART mt_12 23 51 IPR003690 GO:0003690|GO:0006355
Ssu6g0306 207 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Ssu6g0306 207 Gene3D Transcription termination factor 3, mitochondrial 5 190 IPR038538 -
Ssu6g0306 207 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 8 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0306 Ssu-Chr6 4900542 4901165 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g0306 mTERF 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0306 K15032 - gmx:102667698 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0306 6 4900542 4901165 Ssu1g1352 1 29647062 29654850 PCT