Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0305 ATGGTGGATAACGTTGGAGGCAGTTCCTCTAATGCTGAACATAGTGGCATCATCAGGGAGCAAGACCGGTTGTTGCCGATAGCCAATGTTGGGAGGATCATGAAGCAGATTTTACCTCCGAACGCAAAAATCTCCAAGGAATCGAAGGAAACAATGCAAGAGTGTGCGTCAGAGTTCATAAGCTTTGTGACGAGCGAGGCGTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAACGGGGATGACATCTGCTGGGCCTTGGGGTCGCTTGGTTTTGATGACTATGCAGAGCCACTGAGAAGGTATTTGCTCAGATATAGAGAACTAGAAGATAGATCAACTAACCAAGACAGAGGAAATAGTCCACCCAGAAGAGAAGGATCGTGA 390 0.4769 MVDNVGGSSSNAEHSGIIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECASEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLLRYRELEDRSTNQDRGNSPPRREGS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0305 129 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Ssu6g0305 129 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Ssu6g0305 129 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Ssu6g0305 129 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu6g0305 129 Gene3D Histone, subunit A 16 128 IPR009072 GO:0046982
Ssu6g0305 129 SUPERFAMILY Histone-fold 21 120 IPR009072 GO:0046982
Ssu6g0305 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu6g0305 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Ssu6g0305 129 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0305 Ssu-Chr6 4876731 4877120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0305 4 123 CCAAT-HAP3 Transcription Factor Family AT2G47810 61.765 5.55e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g0305 CBFD_NFYB_HMF 9.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0305 K08065 - gmx:100786046 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0305 6 4876731 4877120 Ssu6g0305 6 4876731 4877120 ECH
Ssu6g0305 6 4876731 4877120 Ssu1g1355 1 29691477 29691854 PCT