Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0301 ATGTTCAGTCCAAGCATGGATTCTGCGAGGGATGCTGGGGGTGTGGCAGGGACTGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGAGGAAGAAGTGTGTATCTAAGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCGGTGGAAGGCTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGGCCCCTGGTTATCATCAGtacaaattttttgttgatggaGAATGGCGGCATGATGAGCATCAACCTTATGTATCTGGAGAATATGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAATTTTGTACCTATTTTAACTCCAGAAATGGTTTCTGGATCTAACATGGATCTGGATAATGAGGCTTTTCGACGCATGAGAATATCAGATGTTGATATACAGACCTCTCATCAGCGTATTTCTGCATTCCTATCTATGCACACAGCCTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTATCTTGGATGTTGATTTGCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCTATGGCTCCTCTTTGGGACTTGTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTgctttggattttattttaattttaagagagCTAGGAAATCATGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACTATATCAGCTTGGAAAGAAGGAAAATGGACAGCATTTTCAAGATGTTTGATCCATGTAGGGCCGTATGATAATTTGAAAGATATTGCTGTGAAGATCCTGCAAAATGGAATTTCAACATATATGCTTGATTCTTACCAAAATGATTTTCCAGGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCTATACTTCAACTTCCAATTTGTGCAATCCCTGTGGGCACGTGGGTGCCCAAAATTGGGGAGTCAAATTGCCGGCCTCTAGCAATGTTGAGACCAAGCGCTTCGCTTACTTCAGCCCTAAACTTGTTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAATCTTGATGAAATGACTATTCATCAGGCATTGCAATTGGGCCAGGATTCTTATAATTCTTACGAGCTGAGAAGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1356 0.4049 MFSPSMDSARDAGGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFFVDGEWRHDEHQPYVSGEYGIVNTVLLATDPNFVPILTPEMVSGSNMDLDNEAFRRMRISDVDIQTSHQRISAFLSMHTAYELLPESGKVVILDVDLPVKQAFHILHEQGIPMAPLWDLCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFSRCLIHVGPYDNLKDIAVKILQNGISTYMLDSYQNDFPGICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNCRPLAMLRPSASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSYNSYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0301 451 ProSiteProfiles CBS domain profile. 397 451 IPR000644 -
Ssu6g0301 451 SUPERFAMILY CBS-domain pair 143 268 IPR046342 -
Ssu6g0301 451 CDD E_set_AMPKbeta_like_N 22 100 - -
Ssu6g0301 451 SMART cbs_1 401 450 IPR000644 -
Ssu6g0301 451 SMART cbs_1 163 212 IPR000644 -
Ssu6g0301 451 SMART cbs_1 319 367 IPR000644 -
Ssu6g0301 451 Pfam CBS domain 404 450 IPR000644 -
Ssu6g0301 451 Pfam CBS domain 318 363 IPR000644 -
Ssu6g0301 451 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Ssu6g0301 451 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 451 - -
Ssu6g0301 451 ProSiteProfiles CBS domain profile. 157 219 IPR000644 -
Ssu6g0301 451 Gene3D - 134 272 IPR046342 -
Ssu6g0301 451 ProSiteProfiles CBS domain profile. 316 372 IPR000644 -
Ssu6g0301 451 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 451 - -
Ssu6g0301 451 SUPERFAMILY CBS-domain pair 317 450 IPR046342 -
Ssu6g0301 451 Gene3D Immunoglobulins 18 101 IPR013783 -
Ssu6g0301 451 SUPERFAMILY E set domains 21 102 IPR014756 -
Ssu6g0301 451 Gene3D - 299 451 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0301 Ssu-Chr6 4786970 4798045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0301 11 104 Protein tyrosine phosphatase (PTP) family AT3G01510 31.250 6.87e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0301 - - aprc:113874669 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0301 6 4786970 4798045 Ssu6g0301 6 4786970 4798045 ECH
Ssu6g0301 6 4786970 4798045 Ssu1g1363 1 29874824 29889321 PCT