Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0299 ATGGCTCCTTCTAGGAAATCTAGAAGTGTAAATAAGAGGTTTTCTAATGTTCGTGAGGCTGCATCTAGTAAAGACAAAATTGTAGAGAATGCTAGCAAAAATAGGCTGAAGGCGAGTCCCGGTATTCAGAAGAAGAGAAAATTGGCAGACATGTTAGGGCCACAATGGAATAAGGAAGAGCTTGAGCAATTCTACGAAGCATACCGTAAATACGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGATCTGTGGAAATGGTAGAGGCCCTATACACTATGAACAGGgCATATTTGTCTCTTCCAGAAGGTACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGACAGTGGTAAAGAAAGCAATGATGATGCAGAAATATCTAAAAAGTCTCAAAAGCGTTTGCGGGGAAAGCATCTAAGTGACAATAAAGCATTAGATGGGCACTTTTCAGATCATTCTCAGTCACATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGACATTCTGGAATTAGACCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGTAAAGATAATGGGGAGAGGTTTTTTTCATCTGCCAGGCAGGGCTCCAAACAAATGGTTGATACTAATGATGTTACTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTTGAAAATTTCTGGATCACCagacaattttttttgcctTCACCAGGTCTGA 795 0.4013 MAPSRKSRSVNKRFSNVREAASSKDKIVENASKNRLKASPGIQKKRKLADMLGPQWNKEELEQFYEAYRKYGKDWKKVALAVRNRSVEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESNDDAEISKKSQKRLRGKHLSDNKALDGHFSDHSQSHSVASGDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNGERFFSSARQGSKQMVDTNDVTHKIALALTEASQRGGSLKISGSPDNFFCLHQV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0299 264 CDD SANT 56 90 IPR001005 -
Ssu6g0299 264 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Ssu6g0299 264 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Ssu6g0299 264 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Ssu6g0299 264 MobiDBLite consensus disorder prediction 127 150 - -
Ssu6g0299 264 Gene3D - 2 108 - -
Ssu6g0299 264 PANTHER LIN-9 1 256 IPR010561 GO:0006351|GO:0017053
Ssu6g0299 264 MobiDBLite consensus disorder prediction 1 33 - -
Ssu6g0299 264 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g0299 264 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 256 IPR028306 -
Ssu6g0299 264 MobiDBLite consensus disorder prediction 18 32 - -
Ssu6g0299 264 SMART sant 52 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0299 Ssu-Chr6 4761088 4765266 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g0299 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0299 - - gmx:100811517 485.337