Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0298 ATGCCGAATTCCCACACCCGCAAAGCCCTTTTCCACCTGAAGAAGTTCGTCACATTCCCAGCCCCAAGACTTCATCCTCTTCTCAAACCCCAACGCCCTCACCGACCCTTCTCTCTCAACTTCACCACCGTCTCCGACCCCCACTCCTTCACGATCTCCTACCTCGTCACCCACTGCGGCTTCTCCCCCGAATCCGCCCTCTCCGCCTCCCGCAAGGTCCACTTCGACAACCCCCAGAAGCCCGACTCCGTCCTCGCCTTCTTCACCGCCCGCGGTTTCTCCCCTTCCCAAATCCGCAACATCGTCAAGCGAGAGCGACGCATTATCCTCTGCGACCCCGACAAGGTCCTCCTCCCCAAGTTCGAGTTCCTCCGCTCCAAAGGCGCCTCCCCGGCCGAAATCGTCCACATGGTCAGCACCGGTCCCAGGTTCCTCTCCCGGAGCCTCGACAACCACATCGTCCCCGCCTACGAGTTCGTCCGAGGCTTCCTCGAATCCGACAAACAAATCATCGCCTGCCTGAATCGCAACTCCTGTTTCTTCTCCGACAGCCGCTTGGAGCTCAACGCGAAGATGCTGCTCGACAACGGCGTCAAGCGTTCCAGCATTGCCAAGTTGCTTCGCATGTGGCCCTCTGTGCTGTGCTCCTGTAACCTGTCGGAGACGGTTCGGGAACTGAAGGAGATGGGGTTTGATTCGTCAACCACGACTTTCAGTGTGGCGTTGCTCGCGAAAAGGACCGTGAACAAGGCCAAGTGGGGTGAGAAGGTTGAGACGTTTAGGAAGTGGGAGTGGTCGGAGGAAGACGTTCTTGCAGCGTTTAAGAGGCAGCCTTATTGTATGTTGACATCCACTGAGAAGATTGATGCTGTGTTCAGTTTCTGGGTTAATGAGTTAGGTGGGAGTTCTTCGGAGCTTGTCAAGAGTCCTGTCGTTTTTCAGCTGAGTCTGCAGAGGAGGATGATTCCGAGGGCTTCTGTTTTGCGGTTCCTTGCCTCCGAAGGTCTGAGGAAAAAGGGCGCGAGGACGGTCACCGCGTTTCTCATGACGGAGAAATTGTTCCTGGACAAGTTTGTGAAGCGTTTTGAGAAGGATTCTTCCAGGTTGTTGAAGATGTATGAGGAAAGTATGAATGTTGGGAGTAACGGGGAGAAGAAGAACGCAACGCCTGCTTGTAGCCTTGTTCTGTCGTTCCCTTGA 1200 0.5533 MPNSHTRKALFHLKKFVTFPAPRLHPLLKPQRPHRPFSLNFTTVSDPHSFTISYLVTHCGFSPESALSASRKVHFDNPQKPDSVLAFFTARGFSPSQIRNIVKRERRIILCDPDKVLLPKFEFLRSKGASPAEIVHMVSTGPRFLSRSLDNHIVPAYEFVRGFLESDKQIIACLNRNSCFFSDSRLELNAKMLLDNGVKRSSIAKLLRMWPSVLCSCNLSETVRELKEMGFDSSTTTFSVALLAKRTVNKAKWGEKVETFRKWEWSEEDVLAAFKRQPYCMLTSTEKIDAVFSFWVNELGGSSSELVKSPVVFQLSLQRRMIPRASVLRFLASEGLRKKGARTVTAFLMTEKLFLDKFVKRFEKDSSRLLKMYEESMNVGSNGEKKNATPACSLVLSFP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0298 399 Gene3D Transcription termination factor 3, mitochondrial 163 371 IPR038538 -
Ssu6g0298 399 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 Pfam mTERF 183 337 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 Pfam mTERF 85 234 IPR003690 GO:0003690|GO:0006355
Ssu6g0298 399 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 379 - -
Ssu6g0298 399 PANTHER CGI-12 PROTEIN-RELATED 31 379 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0298 Ssu-Chr6 4747471 4748670 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g0298 mTERF 4.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0298 K15032 - gmx:100788877 426.402