Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0297 ATGGAGCGGTACGGCCTGGCCAGCGAAGGGTCACAGTCTGATCCGTCGCCGGAATGGACTGTCGCCGGTGGCGACGCTGGCCTCGAAGAGTCCTCGTGGCAATCGGGATTAGCCGGTGCCGAATCGTACCCTCTGCGTCCCGACGAGGCCGATTGTATCTACTATATGAGGACGGGTTTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCTCGTGACCGTGCCGCGATTATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCGTGCAAATTTGGTGCATCCTGCAAGTATCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCTGCTAAATTATTATGGATATCCATTGCGAGTGGGGGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAACCTGTGGGTGTTCAAGTTCTAGCACCATCACCAGTTCCCCCAGTTTCGCCTCTGCCTGTACCTGTACCTTCACcaatatatccaactgtacagcCCCCATCTGGTCCTTCATCACAACAATATGGTGTACTTGTCGCAAGGCCACCTATGCTACCTGGCTCGGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCTATGGTCCCTTATCCAGGCTGGGGTCCTTACCAGGCTCCTGCAACAAACCCTGTACTTCCATCTAGCACTACGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCAGCTACCTTCATCTGCAGCTACTTATACTGGAACTTATCAACCTTCAGGTTCCTCAATTGGTCATTCAAGTGCTAGTCAGAAGGAGCATGCACTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCGTCATGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTGATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCTCCACTTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCTCTGGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCcgtcatcttcatcatcagagtTGCGGCCTGAACTTGGTGCAGGATCCAGCAAGGAGTCTGTTTCATCCAGAATGGCTTCAACGAGCACATCAACTGGATCAGTTGGCTTAACCTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCGGAGTTCCAGTTCTTCAGCAACTACGAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1452 0.4993 MERYGLASEGSQSDPSPEWTVAGGDAGLEESSWQSGLAGAESYPLRPDEADCIYYMRTGFCGYGTRCRFNHPRDRAAIIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTATPVLLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPVGVQVLAPSPVPPVSPLPVPVPSPIYPTVQPPSGPSSQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPYPGWGPYQAPATNPVLPSSTTSNVGSTQLYGITQLPSSAATYTGTYQPSGSSIGHSSASQKEHALPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKANVILSPVGLPLRPGAPLCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSSKESVSSRMASTSTSTGSVGLTLSSVGPISHSSTQPSARSSSSSATTSATTSSTVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0297 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Ssu6g0297 483 SUPERFAMILY CCCH zinc finger 307 333 IPR036855 GO:0046872
Ssu6g0297 483 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g0297 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Ssu6g0297 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Ssu6g0297 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Ssu6g0297 483 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Ssu6g0297 483 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Ssu6g0297 483 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 469 - -
Ssu6g0297 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Ssu6g0297 483 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Ssu6g0297 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Ssu6g0297 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Ssu6g0297 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Ssu6g0297 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Ssu6g0297 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Ssu6g0297 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Ssu6g0297 483 Gene3D - 303 381 - -
Ssu6g0297 483 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Ssu6g0297 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Ssu6g0297 483 PANTHER PROTEIN PHOSPHATASE RELATED 1 469 - -
Ssu6g0297 483 MobiDBLite consensus disorder prediction 279 307 - -
Ssu6g0297 483 Gene3D - 128 175 - -
Ssu6g0297 483 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Ssu6g0297 483 MobiDBLite consensus disorder prediction 279 295 - -
Ssu6g0297 483 Gene3D - 46 127 - -
Ssu6g0297 483 MobiDBLite consensus disorder prediction 406 483 - -
Ssu6g0297 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Ssu6g0297 483 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0297 Ssu-Chr6 4715301 4719792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0297 1 449 C2H2 Transcription Factor Family AT5G18550 55.965 9.45e-156 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g0297 zf-CCCH 7.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0297 - - gmx:100789405 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0297 6 4715301 4719792 Ssu6g0297 6 4715301 4719792 ECH
Ssu6g0297 6 4715301 4719792 Ssu1g0719 1 16016008 16021871 PCT