Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0296 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGACCCCAGCCAAACTCAAATGTGTCTCTCTCTCCTTCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGCAGAAGAAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTGAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGGGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTCTCCTTTCTCCTATGGATGTTCAAGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGTTCCTCACTAACACCACTCAGTCCAAACAACCAACCAATCAAAATAGCCTCTCTCAGGTTATTCACACTTCAAACTGTGGAAACCCCTCCACATTGAACAATGACATGCCTGTTGAAACTACATATGAGTCAACTCAGGATGATAGTTTCTTCTTTTCCAGTGATTCTAACTCTGGCTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTGCTTCCTCCAGTACCAACGGTTCAAACTCCAGAAAGAGCAATGTGAGTGATCAAAAGGCTAACACAAGCTCCATGGAGAGTACTCATCATCAGTACTCACATGTTGACATGACTTCATTCTCTCAAGAAGGCATAGAAATGCCACCAAGGGCCTctaatttttcagatttttgtTACCCAAGTGAAGTGAGTCAAGGAACATGGGATGATCAGCAGTCATGGGATTGGAATTGCAGTGAACTTTCAGCTATATTTAAGAACCCATTAAGGGTGGAAGATGGGTGCATGGATGCATTGTACCCCATTAATGATAGTCCAAGTCCAAGCTATGGGCTAATGAATCAGGCTGCTTCTTCAACTACTTGTTCTCCATCACTTCCTCTCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1032 0.4438 MSTSRTSDTPFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLLSPMDVQVQVQPLLPASQFLTNTTQSKQPTNQNSLSQVIHTSNCGNPSTLNNDMPVETTYESTQDDSFFFSSDSNSGYLECIVPDNCFRPASSSTNGSNSRKSNVSDQKANTSSMESTHHQYSHVDMTSFSQEGIEMPPRASNFSDFCYPSEVSQGTWDDQQSWDWNCSELSAIFKNPLRVEDGCMDALYPINDSPSPSYGLMNQAASSTTCSPSLPLFGDVDLGYPLF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0296 343 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Ssu6g0296 343 MobiDBLite consensus disorder prediction 206 235 - -
Ssu6g0296 343 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 343 - -
Ssu6g0296 343 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Ssu6g0296 343 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Ssu6g0296 343 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Ssu6g0296 343 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 343 - -
Ssu6g0296 343 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Ssu6g0296 343 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Ssu6g0296 343 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Ssu6g0296 343 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0296 Ssu-Chr6 4707408 4708439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0296 1 243 AP2-EREBP Transcription Factor Family AT5G18560 41.311 2.33e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g0296 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0296 - - gmx:100812047 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0296 6 4707408 4708439 Ssu1g0720 1 16026330 16027289 PCT