Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0290 ATGGGAAGGCCCTCGAAGACTCAGGTTTCGAACGACTCAACCTCCTCCTCCGAGGACGCCGCCGCCAACCACCAGATCGAAGAGGACGACGAGGAGCTCGAAGCGGTGGCTCGCTCCGCTAGCTCCGACGACGACGATAATTCGCCTGAAAGAGCCGCCGAAGACGACGATGAGGACAAACAGGATGAGAGTAATGTTGATCCTGGAATTGGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAGCAATTGAAGAAACAGAAGATTCAGGAGATATTGGATGCACAAAATGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTTCCCAGAAGAAGACAAAGGGAAGGGGACGCCATGCATCAAAAGTAACTgaagaagaggaagatgaagaataccttaaagaagaagaagatggttTAGCAAACACACGGCTGGTGACTCAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGCAAAACCTTACAAACAATATCTTTGTTAGGATACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAACTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTGCGTGCTATAAAGTTCCTTGGCAACCCTGATGAAAGGAAGCACATAAGAGAGGAGTTACTCGTTGCTAGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCATCGAATCAAGAATGAGAACTCACTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACTGGCACACCATTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACATAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTCATTACAAATGCCGGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTGCTTATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATCTCATGTTTCGTGGATATCAATATTGTCGGATAGATGGCAATACTGGTGGAGAAGATCGGGATGCTTCAATTGAAACTTTCAACAAACCTGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACCGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGCTGCTTCAAATGGTTAGATTTGgtgctgaaatggtttttagtTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACGGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATgctatcaaatttaagatggaCGACAcTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGaacaaatttgatttcaaaaaaattgtgagtGAAAACTGGGTTGAACCACCAAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGCCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTAAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGcaAACACATCAGAAGAATCAGTTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCgaaatgatataaaaagtattgcTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGatagaattattaaaaacattgaaaGAGGGGAGGCGAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGCGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGTTTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGTCCTTGTTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTCACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATTTGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCGGCCAAGAGCATGACCCCATCGAAGCGAAGTTCCTTGCCTAGACAGACCGAGAGTCCCTCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAAGCTCGgggaagaagaaaaaataa 3171 0.4049 MGRPSKTQVSNDSTSSSEDAAANHQIEEDDEELEAVARSASSDDDDNSPERAAEDDDEDKQDESNVDPGIGKREKARLREMQQLKKQKIQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVASKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIETFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIAKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSSLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEFDERERQARKEKKLAAKSMTPSKRSSLPRQTESPSLKKRKQLTMDDYLSSGKKKK 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0290 1056 Gene3D - 831 885 - -
Ssu6g0290 1056 CDD SANT 834 878 IPR001005 -
Ssu6g0290 1056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 636 IPR001650 -
Ssu6g0290 1056 Gene3D - 919 1022 - -
Ssu6g0290 1056 Pfam SNF2-related domain 193 460 IPR000330 GO:0005524|GO:0140658
Ssu6g0290 1056 SUPERFAMILY Homeodomain-like 834 884 IPR009057 -
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 1003 1019 - -
Ssu6g0290 1056 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 1056 - -
Ssu6g0290 1056 Gene3D iswi atpase 886 918 - -
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g0290 1056 SUPERFAMILY Homeodomain-like 886 1008 IPR009057 -
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 1034 1056 - -
Ssu6g0290 1056 Coils Coil 78 98 - -
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 1 76 - -
Ssu6g0290 1056 ProSiteProfiles SANT domain profile. 830 882 IPR017884 -
Ssu6g0290 1056 Pfam Helicase conserved C-terminal domain 483 595 IPR001650 -
Ssu6g0290 1056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 357 IPR014001 -
Ssu6g0290 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 678 IPR027417 -
Ssu6g0290 1056 SMART ultradead3 176 368 IPR014001 -
Ssu6g0290 1056 Pfam HAND 744 827 IPR015194 GO:0003677|GO:0006338|GO:0031491
Ssu6g0290 1056 CDD SF2_C_SNF 481 606 - -
Ssu6g0290 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 395 IPR027417 -
Ssu6g0290 1056 Pfam SLIDE 888 998 IPR015195 GO:0003677|GO:0005634|GO:0006338
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 127 160 - -
Ssu6g0290 1056 Gene3D - 401 693 IPR027417 -
Ssu6g0290 1056 Coils Coil 981 1015 - -
Ssu6g0290 1056 SMART helicmild6 511 595 IPR001650 -
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 1003 1056 - -
Ssu6g0290 1056 Gene3D - 181 396 IPR038718 -
Ssu6g0290 1056 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 743 833 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ssu6g0290 1056 MobiDBLite consensus disorder prediction 48 63 - -
Ssu6g0290 1056 CDD DEXHc_SMARCA1_SMARCA5 177 397 IPR044754 GO:0005524
Ssu6g0290 1056 PANTHER SNF2/RAD54 HELICASE FAMILY 7 1056 - -
Ssu6g0290 1056 SMART sant 933 994 IPR001005 -
Ssu6g0290 1056 SMART sant 831 880 IPR001005 -
Ssu6g0290 1056 Gene3D ISWI, HAND domain 732 830 IPR036306 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0290 Ssu-Chr6 4540545 4550382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0290 201 622 RAD5 or RAD16-like Gene Family AT1G02670 27.525 4.93e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g0290 SNF2_N 2e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0290 K11654 - gmx:100791510 1984.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0290 6 4540545 4550382 Ssu6g0290 6 4540545 4550382 ECH
Ssu6g0290 6 4540545 4550382 Ssu1g0729 1 16232269 16239704 PCT