Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0288 ATGGAAGGCTCCCTCAACGAACGTCTCGATTTTGGGAAGATGGGATATGGGTGCAAGCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCAACGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAACTCGTTCGCCGAGATGTCAAACAAGTTATTTGTTCAGTTTGTGACACCGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGTGTCAAAATGGGAGAACATTTCTGCAACATCTGCAAATTCTTCGATGACGATACAGAGAAAGAAGTGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGtggagataatttttttcactgcAATAAGTGCGGGTCTTGTTATTCAGTTGCTCTGCGTGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACTATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCAAGAgatgataaaatttgacaaATATTGTTGTCCCATATGCTCCAAGTCGGTGATTGACATGTCTAGGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGATACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTCTTGGCCAAAAATGCGGTCACTGCAGTTCATATAATACTCGTGCAATTGCGCCACCAGTTCTTCCTCAATGA 804 0.4142 MEGSLNERLDFGKMGYGCKHYRRRCRIRAPCCNEIYSCRHCHNEATSLLKNPFDRHELVRRDVKQVICSVCDTEQPVAQVCTNCGVKMGEHFCNICKFFDDDTEKEVFHCDDCGICRVGGGDNFFHCNKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYQEMIKFDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0288 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Ssu6g0288 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Ssu6g0288 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Ssu6g0288 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Ssu6g0288 267 Gene3D - 227 262 - -
Ssu6g0288 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Ssu6g0288 267 SUPERFAMILY RING/U-box 152 202 - -
Ssu6g0288 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Ssu6g0288 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Ssu6g0288 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Ssu6g0288 267 Pfam Ring finger domain 152 195 IPR001841 -
Ssu6g0288 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Ssu6g0288 267 SMART ring_2 153 195 IPR001841 -
Ssu6g0288 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0288 Ssu-Chr6 4515833 4519047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0288 10 266 C2H2 Transcription Factor Family AT3G18290 41.603 4.93e-59 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0288 K10144 - gmx:100792038 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0288 6 4515833 4519047 Ssu6g0288 6 4515833 4519047 ECH
Ssu6g0288 6 4515833 4519047 Ssu7g1911 7 38235268 38237357 ECH
Ssu6g0288 6 4515833 4519047 Ssu4g0546 4 8546845 8549128 ECH
Ssu6g0288 6 4515833 4519047 Ssu1g0732 1 16296875 16299366 PCT