Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0286 ATGGAAGGGCACACTGAAAGTACTAACTCCGCGATGCCGCCACTCTCTCAAATCCCATCTTCTTCTCTTCACCCTTCAACCATAGCTGAACCGGGTAACAACACCTCCAGGAAGCGTGTTAAAAAATTGGACCATCCCAATTCCGAGAGCCTCAACATGGAACGTGAACGAAGGTCGAAGATGACTCAGATGTTCACTCAGCTTCGAACCACTGTCCCTGGTGTCTTTCCTCAGGCTACAAGGGAAGTGATTATAAACGAGACAATTCGGTACATTAAGGAGCttgagaagaagaagcaaagttTGGAGGAGTTGAAGGAGTCAATGACAGGAGTAGAAGGGTCGATGCCTGCATGTGGTAACAACAGGAATTGCTCCATCACGGCTACTGTCTCTGCCAATGTTGCATTCTTTGGTATTCAATCCCTGCCTCGACCCGGTTTGACCacagaaattttgaaagtgttCTGCAAGCACCAAACTGACATTTTGGCTGCCAATGTCTCGGTTCATGATGGCAAGTTGATATTGGCAATAACGGCATTGGTGCAAAATGGTGGTCATGGAAACAGTCTCATTGAGAATATTAGAAGAGAAATTATGAGTTTGTAG 612 0.4363 MEGHTESTNSAMPPLSQIPSSSLHPSTIAEPGNNTSRKRVKKLDHPNSESLNMERERRSKMTQMFTQLRTTVPGVFPQATREVIINETIRYIKELEKKKQSLEELKESMTGVEGSMPACGNNRNCSITATVSANVAFFGIQSLPRPGLTTEILKVFCKHQTDILAANVSVHDGKLILAITALVQNGGHGNSLIENIRREIMSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0286 203 MobiDBLite consensus disorder prediction 1 56 - -
Ssu6g0286 203 Coils Coil 85 115 - -
Ssu6g0286 203 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 202 - -
Ssu6g0286 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Ssu6g0286 203 SMART finulus 51 101 IPR011598 GO:0046983
Ssu6g0286 203 CDD ACT 140 197 - -
Ssu6g0286 203 Gene3D - 32 122 IPR036638 GO:0046983
Ssu6g0286 203 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 202 - -
Ssu6g0286 203 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Ssu6g0286 203 MobiDBLite consensus disorder prediction 35 56 - -
Ssu6g0286 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 110 IPR036638 GO:0046983
Ssu6g0286 203 MobiDBLite consensus disorder prediction 1 34 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0286 16 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 33.333 4.11e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g0286 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0286 - - gmx:102670256 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0286 6 4502881 4503667 Ssu6g0286 6 4502881 4503667 ECH