Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0280 ATGGCCTCTTCACATAATGTTGAGTTGGAGGCTGCTAAGTTTCTGCATAAACTCATTCAAGATTCTAAAGATGAGCCAGCCAAGCTCGCTACTAAACTCTATGTGATACTGCAACACATGAAATCAAGTGGGAAGGAGCATTCAATGCCATATCAAGTGATTTCAAGGGCAATGGAGACTGTCATCAACCAACATGGTCTTGATATTGAAGCATTGAAATCATCACGTCTTCCTTTGACTGGTGGTCCTCAAATAGGATCTTCTTCACAGTCAGTGAATGTTACAAAAGATTCCAGAGTGGGCTTGGCTGAAAATGAGGTGTCCAAAATGGACCCATTTGCTTCTGGCCGGCCACCAGTTGCCCCAAGTGGTGGAGCACCTGATTATTATCAAGGATCTGTGGCTCAGAGGAGTAGTCAGTCTTTTGATCAAGGAAGTCCTTCTAGTTTGGATTCTAGGTCTGCTAACTCACAATCACAAGACAGACGTGATACTGCCAATTGGGACAAACAGGTGAATCAAAAAGATGGTAAGAAAGCTACGACAAAGAGAAAGAGGGGAGATACATCATCACCTGTGGAACTGCATGTTGACAGTTCTTCTCAACTGGATCCTCGCAATACTGGTGTTAATGCAAGGAAGGGGAAAATGACCAAGGCTGAATCGTCAGATGGTCTTCCAGTTAAAAGTGGTGAACTAACCAACTTTAACATAGCTCCAAATAGTGGTCAAATGGAGAATGTTTTGACTTTGTCTGGTAGCATGAGAACAGTGCTTAGAGCAAACCAAGAAGGTCATCATTTATTGGCAAAGCAAACTGATTTGACAAAGATTGGCAATCCGATGGTGCGAGCACCAAATTCAAAGTATGCAGAAGACACGGAAGTTTCCTCTGCACATATTGCTTCAGGGAAGCAACAAGGTGCTTATGCAAAGGTTCATGGAGGGATGGCGGTTCCAGCTGGTGCATCTTCAATGGCTGAAGCTTTCTCAAATTCAATGCAATATGGTGGTGCAGTTGAGCGTGATGGGGGAAGTTCTACTAGTTTAGCTGATGGGCATAAAATTGCTCAGATTGGCAGGCAAAATAGTGTCTCAGAAATGACTATGCTTAGACAGAGTGTTCCTCCTAGAGACACAGGAAAATCCACTGTTCCTGCCATGCCTGCATCATCTGCCATGCCTTTCAAGGAACAACAGTTAAAACAGCTCCGAGCTCAGTGCCTTGTTTTTCTAGCATTTAGAAATGGTCTACCACCAAAGAAACTACATCTTGAAATTGCACTTGGAACAGCCTTTTCTAGAGAAGAAGGTTCTCGCAAAGATCTAATTGACCACAAAGGAAAAGCACAATCTTTTAATGAACCAGGTAATGCATCTGGGGTCATGGTGCCATTTGGAGGTCCAAGCAATATGAGACAGACAGATAAAAACCCTTTGGGGTCCTCTTCAGCTGGCAAAATTGTCGAGGCTGACTCTTTGTCAAAGGGAACTGAGAGTCCAAGAATGTTGGAGGACAAAGGTAACATACATGTCACAAAAAGAGGAGAGGTTGAAAGGCGAATTCAAGAAAGAGTGGCTGCACAAGCTTCCTCAGCCACTTCATGTCAGCAGCAAGATTCTTCAAGTACAAGGGGCCCTGTAGTTGGTAATAATCATTTGGATGATGTTGACACCGGTAATATGCAGGTTGGAAGATCTAACCAATCTTCTGTTGTTGGCCCAAATAGTTGGGCTGGTTTTGCTGGTGCTAATGAGGCTTCAAAGGGACCTCCACAGATCTCTACTATTCAACATGAGTTGCCtatagaaagaagagagaatattCCTAGTCAGTTTCAAAATGTTGGTAACAATTGTGGTTCACGGAATCAGAATTCTGTTAATCActtgtctttttctttaaaagagcAATGGAAACCTGTTCCAGGGACAGACAGTGATCATCATGGAGCAACCATGATGAAGGATGGAAATGTGATGATAAAACACGTTTCTCCAGATGGCTTCAAAACAGTTCCAGTTGATAATGCATCAAAGCATGGCATCTCTTTTGCTACAGAGCAAGATGGGAATGAGAGGTTGGTATTAGCTGATTTGCCACCTTCTCCAAAATGTACAATGTCAGAGAGATGGATTATGGATCAGCAGAAAAAGAGGCTTCTAGTTGAGCAAAATTGGGTGCAAAAACAGCAGAAAACAAAGCAAAGAATGGCTACAAGTTTTCACAAGTTAAAgGAAAATGTGAGCTCCTCTGAAGATATTTCTGCTAAAACCAAAAGTGTCATAGAGTTGAAAAAACTTCAGCTATTAGAGCTCCAACGTCGTCTCAGGAGTGATTTTCTAAATGATTTTTTCAAACCAATTTCAACCGAGTTGgaacatttaaaatcaattaagaaaCATAGGCATGGTAGGAGGGTTAAACAACTTGAAAGGTTTGAGCAGAAAATGAAGGAAGAGCGTCAGAAACGGATTCGTGAGAGGCAGAAGGAGTTTTTCAGTGAGATAGAGGTTCACAAGGAAAAACTTGATGATGTATTCAAAATCAAGAGGGAACGGTGGAAGGGTTTCAATAGATATGTGAAGGAGTtccataaaagaaaagaacgtATTCATCGTGAGAAGATTGATAGAATCCAGCGGGAAAAGATTAATTTACTGAAAATAAACGATGTGGAGGGCTATCTTCGAATGGTACAGGATGCAAAATCAGATCGTGTAAAGCAGCTACTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGGTCCAAGCTACAGGAAGCGAAGACTGCAGCAGGACGTTTTGGGCAGGATGTTGATGAGACAGGAAATGGCAATTTTCTTGAGAATAGTGAAACAGAAAATGAGGATGAAAGTGATCAGGCAAAGCATTATATGGAAAGCAATGAGAAGTATTATAAGATGGCTCACAGTATAAAGGAGAGCATTGCAGAGCAGCCATCTAGTTTGCAAGGCGGGAAATTGAGGGaATATCAAATGAATGGCCTGAGGTGGCTGGTTTCCCTATACAACAATCATTTGAATGGAATTCTTGCTGATGAAATGGGACTGGGTAAAACAGTACAGgttatttctttaatttgctATCTGatggaaacaaaaaatgatagagGACCATTTCTTGTGGTCGTGCCCTCTTCAGTTCTACCTGGTTGGGACTCAGAAATAAACTTCTGGGCTCCTGGTGTTCATAAAATTGTCTATGCTGGACCGCCAGAGGAGAGGCGTCGGTTATTCAAGGAAAGGATTGTTCACCAGAAATTCAATGTTCTTTTGACtacatatgaatatttgatGAATAAGCATGATAGACCAAAGCTGAGCAAAATACATTGgcattatataataattgatgaaGGCCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACACTATCAGAGCTCTCACAGATTGCTGTTAACGGGAACGCCAttgcagAACAATCTTGAAGAACTATGGGCACTACTTAATTTCTTGTTACCAAACATATTCAATTCATCGGAGGACTTCTCTCAATGGTTTAACAAGCCATTTGAGAGTGCAGGTGATAGCTCACCTGATGAAGCTTTATTGTCTGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTTTGAGACCATTTGTACTTAGGAGACTGAAACACAAGgttGAAAATGAGCTGCCTGAGAAGATTGAGAGACTAATAAGATGTGAGGCTTCTTCATATCAAAAACTTTTGATGAAGAGGGTTGAAGATAATCTTGGTTCTATTGGCTCTTCAAAGgttCGATCAGTACACAACTCTGTCATGGAGCTTCGTAATATATGCAATCATCCATATCTCAGCCAGCTTCATGCAGAGGAGGTGGATAACTTCATACCTAAACATTATCTGCCACCAATTATTAGACTTTGTGGGAAACTTGAGATGTTGGACCGTTTATTACCAAAATTGAAGGCGACAGATCATCGGgttcttttcttttcaacaatGACTAGGCTTCTGGATGTTATGGAGGAATACTTAACCTTAAAACAGTATCGGTACCTCCGGTTGGATGGGCATACATCAGGAGGTGATCGTGGTGCTCTGATTGACCTATTTAACCAACCCGATTccccatattttattttcttgctcaGCATTCGAGCTGGTGGTGTTGGAGTGAATCTTCAAGCTGCTGACACGGTGATCTTATTTGACACTGACTGGAATCCTCAGGTTGATTTGCAAGCTCAAGCAAGGGCTCATAGAATTGGTCAAAAGAGGGATGTTCTTGTTCTTCGGTTTGAAACGGTTCAAACCGTTGAAGAACAAGTCAGGGCTTCGGCGGAGCACAAACTTGGCGTTGCTAATCAGAGCATTACTGCTGGTTTTTTTGACAATAATACAAGTGCTGAGGATCGAAGAGAATACTTAGAAGCGCTCCTGCGTGAGTGTAAGAAAGAAGAAGCTGCACCTGTTTTGGATGATGATGCTCTAAATGATCTCTTAGCCCGCAgTGAAACAGAGTTAGATATATTTGAGGCTGTTGataaaaaaggaaggaagatgAGCTGGCTACATGGAAGAAATTGGTGCTTGGACAGGCAACTGATGGCTCTGATCTTAGTCCTCCACTACCTGCTCGTCTGGTCACTGATGAAGACCTGA 4680 0.4028 MASSHNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALKSSRLPLTGGPQIGSSSQSVNVTKDSRVGLAENEVSKMDPFASGRPPVAPSGGAPDYYQGSVAQRSSQSFDQGSPSSLDSRSANSQSQDRRDTANWDKQVNQKDGKKATTKRKRGDTSSPVELHVDSSSQLDPRNTGVNARKGKMTKAESSDGLPVKSGELTNFNIAPNSGQMENVLTLSGSMRTVLRANQEGHHLLAKQTDLTKIGNPMVRAPNSKYAEDTEVSSAHIASGKQQGAYAKVHGGMAVPAGASSMAEAFSNSMQYGGAVERDGGSSTSLADGHKIAQIGRQNSVSEMTMLRQSVPPRDTGKSTVPAMPASSAMPFKEQQLKQLRAQCLVFLAFRNGLPPKKLHLEIALGTAFSREEGSRKDLIDHKGKAQSFNEPGNASGVMVPFGGPSNMRQTDKNPLGSSSAGKIVEADSLSKGTESPRMLEDKGNIHVTKRGEVERRIQERVAAQASSATSCQQQDSSSTRGPVVGNNHLDDVDTGNMQVGRSNQSSVVGPNSWAGFAGANEASKGPPQISTIQHELPIERRENIPSQFQNVGNNCGSRNQNSVNHLSFSLKEQWKPVPGTDSDHHGATMMKDGNVMIKHVSPDGFKTVPVDNASKHGISFATEQDGNERLVLADLPPSPKCTMSERWIMDQQKKRLLVEQNWVQKQQKTKQRMATSFHKLKENVSSSEDISAKTKSVIELKKLQLLELQRRLRSDFLNDFFKPISTELEHLKSIKKHRHGRRVKQLERFEQKMKEERQKRIRERQKEFFSEIEVHKEKLDDVFKIKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKTAAGRFGQDVDETGNGNFLENSETENEDESDQAKHYMESNEKYYKMAHSIKESIAEQPSSLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWDSEINFWAPGVHKIVYAGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESAGDSSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASSYQKLLMKRVEDNLGSIGSSKVRSVHNSVMELRNICNHPYLSQLHAEEVDNFIPKHYLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGGDRGALIDLFNQPDSPYFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLEALLRECKKEEAAPVLDDDALNDLLARSETELDIFEAVDKKGRKMSWLHGRNWCLDRQLMALILVLHYLLVWSLMKT 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0280 1559 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 95 1525 - -
Ssu6g0280 1559 Gene3D - 987 1236 IPR038718 -
Ssu6g0280 1559 Gene3D - 1237 1459 IPR027417 -
Ssu6g0280 1559 Coils Coil 1472 1492 - -
Ssu6g0280 1559 PANTHER SNF2/RAD54 HELICASE FAMILY 95 1525 - -
Ssu6g0280 1559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1485 IPR027417 -
Ssu6g0280 1559 Coils Coil 912 932 - -
Ssu6g0280 1559 Pfam Helicase conserved C-terminal domain 1316 1429 IPR001650 -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 132 162 - -
Ssu6g0280 1559 Coils Coil 949 969 - -
Ssu6g0280 1559 ProSiteProfiles HSA domain profile. 816 890 IPR014012 -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 933 961 - -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 105 228 - -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 527 549 - -
Ssu6g0280 1559 Pfam SNF2-related domain 1000 1290 IPR000330 GO:0005524|GO:0140658
Ssu6g0280 1559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 965 1227 IPR027417 -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 193 208 - -
Ssu6g0280 1559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1008 1175 IPR014001 -
Ssu6g0280 1559 Coils Coil 811 831 - -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 466 552 - -
Ssu6g0280 1559 SMART helicmild6 1345 1429 IPR001650 -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 499 524 - -
Ssu6g0280 1559 MobiDBLite consensus disorder prediction 163 192 - -
Ssu6g0280 1559 CDD DEXHc_SMARCA2_SMARCA4 993 1229 - -
Ssu6g0280 1559 CDD SF2_C_SNF 1307 1439 - -
Ssu6g0280 1559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1319 1465 IPR001650 -
Ssu6g0280 1559 SMART ultradead3 992 1186 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0280 Ssu-Chr6 4435713 4449144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0280 1316 1486 RAD5 or RAD16-like Gene Family AT5G22750 33.333 6.95e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g0280 SNF2_N 5.2e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0280 - - gmx:100815262 2791.53