Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0277 ATGCCTACCATGGCTGTGGGAGCATTGTACGAGAAACTAACGACAGTCATGACCTCGGATCATGCTTCCGTCGTCTCAATGAACATTTTTGTTGCTCTTCTTTGCGCTTGCATCATCATCGGTCACTTGTTGGAGGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTCTTCATATTGCTCACTACTGGAGGAAAAAGCTCTCATATACTAGTCTTCAGTGAAgatcttttctttatttaccTTCTTCCACCCATCATTTTCAATGCCGGGTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTCTTTGGCGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTAGGTGCCATACACTTTTTCCAGAAATTGGACATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTATATAGCCTGGTCTTTGGGGAGGGGGTAGTAAATGATGCTACCTCCGTAGTACTCTTCAAAGCAATTCAGAATTTTGATCTCTCTCACATTGACTTAACCACTGCCTTACAGTTAAtaggaaattttttatatttattcattgcAAGCACTGTGCTGGGAATCTTTGCTGGATTGCTTAGTGCATACATTATTAAGAAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGATACTCATGGCATACCTTTCATATATGCTAGCTGAACTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTATACGTGGCATAATGTGACAGAAAGTTCAAGAGTGACAACCAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTTATCTTCCTCTATGTGGGGATGGATGCATTAGATATAGAGAAGTGGCGATTTGTAAGTCAAAGTCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCCTAGTGGGAAGAGCTGCTTTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATCGCACTTGCTTACAATCAGTTTACCAGGCTGGGCCATACTAAATTGCGCGAGAATGCCATCATGATCACTAGTACCATCACCGTTGTACTCTTCAGCACATTGGCGTTTGGGTTGATGACAAAGCCACTTGTGAGGCTATTGCTTCCTTCCTCTAAACACGTAATCAGCTTGCCGTCCCCACCTTCGACACCCAAATCTTTCACTGTGCCACTTCTTGGCAGTGGAGAGGGTTCATGGGCCAATGGTGGCGCCCAAAATGGGCCTCCACCAAGCACCTTGAGGATGCTCCTAAGCTGCATCCCTACTCGTGGGGTACACCACTATTGGCGCAAATTTGATGATTCTGTCATGCGACCCGTGTTTGGTGGACGAGGCTTTGTACCTTATGTTCCCGGGTCACCCCTTGAACAAAGTGTTCATCAGTGGCGTTGCAGTTAG 1644 0.427 MPTMAVGALYEKLTTVMTSDHASVVSMNIFVALLCACIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALQLIGNFLYLFIASTVLGIFAGLLSAYIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRFVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLLKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLAFGLMTKPLVRLLLPSSKHVISLPSPPSTPKSFTVPLLGSGEGSWANGGAQNGPPPSTLRMLLSCIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWRCS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0277 547 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0277 547 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0277 547 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0277 547 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0277 547 PANTHER SODIUM/HYDROGEN EXCHANGER 3 9 545 - -
Ssu6g0277 547 Pfam Sodium/hydrogen exchanger family 29 447 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu6g0277 547 PANTHER SODIUM/HYDROGEN EXCHANGER 9 545 IPR018422 GO:0006812|GO:0015299|GO:0016021
Ssu6g0277 547 Coils Coil 367 387 - -
Ssu6g0277 547 Gene3D - 146 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0277 Ssu-Chr6 4374954 4378664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0277 7 543 Antiporters AT3G05030 74.354 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0277 - - ccaj:109808409 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0277 6 4374954 4378664 Ssu6g0277 6 4374954 4378664 ECH