Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0276 ATGGAGGTCGCCAGCGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCTCACGAGCTTCTCAGAGAGGTCCTCCTCAGAATTGAGTCGTCGGAGGCCACGTGGCCGCCGCGGAGGAGCGTGGTGGCTTGTGCCGGAGTCTGCCGCGCGTGGAGGCTCATCGTCAAGGAGATAGTCAAGCCACTTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAGGGAACATCTACTTCAGTGCTTCATTAGGCGTAACAGTGGCAGCCAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCCGATGATGGGAAATTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTGGCTGCAGATGATATGTCCAAGGAAAGCAGTGCCTATGTCGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTACGATAGCCAGCTGCCTCATGCAAGggcaaaaattacaaaatgtccCTCCACTAAACTGGTGGATCCGAAACAGGTGTCACCAAGGGTCCCTACAGGCAACTACCCAGTTGCCCACATCTCATATGAATTGAATGTACTAGGCTccagGGGGCCAAGGAGAATGCATTGTGTCATGGATGCCATTCCTGCTTCTGCTATTGAACCAGGAGGGGTAGCCCCTTCACAGACCGGTTTTTCTGTTAGTAACATAGATACTTCGTTCCCATTGTTTCAGACAAACTCAACTCGTCTGGAAAACTCCATACCTGGACACCAGAGCAATAAAGAAGATGATGTGCTAGTATTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTAACGGGCGAGTGACGATTGCTTCAGTTAAAAACTTTCAGCTAGCTGCTTTGCCAGAAAATGGACCTGCTGGACCACAAGAGGATGAGGTCATCCTCCAATTTGGAAAGGTTGGGAAGGACTTGTTTACAATGGATTACCGGTATCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGTGAATGA 1092 0.4844 MEVASDGLEQSWWANMPHELLREVLLRIESSEATWPPRRSVVACAGVCRAWRLIVKEIVKPLQLSSNITFPISLKQPGPREHLLQCFIRRNSGSQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLAADDMSKESSAYVGKLRSNFLGTKFTIYDSQLPHARAKITKCPSTKLVDPKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPSQTGFSVSNIDTSFPLFQTNSTRLENSIPGHQSNKEDDVLVLRNKAARWHEQLQCWCLNFNGRVTIASVKNFQLAALPENGPAGPQEDEVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0276 363 Pfam F-box domain 13 59 IPR001810 GO:0005515
Ssu6g0276 363 Pfam Tub family 74 358 IPR000007 -
Ssu6g0276 363 PANTHER TUBBY-RELATED 5 363 - -
Ssu6g0276 363 SUPERFAMILY Tubby C-terminal domain-like 64 363 IPR025659 -
Ssu6g0276 363 Gene3D Tubby Protein; Chain A 70 363 IPR025659 -
Ssu6g0276 363 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 363 - -
Ssu6g0276 363 PRINTS Tubby superfamily signature 128 144 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 275 292 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 193 220 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 293 309 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 320 339 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 144 168 IPR000007 -
Ssu6g0276 363 PRINTS Tubby superfamily signature 341 363 IPR000007 -
Ssu6g0276 363 SUPERFAMILY F-box domain 6 57 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0276 Ssu-Chr6 4341680 4344066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0276 3 363 TUB Transcription Factor Family AT2G47900 67.213 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu6g0276 Tub 6.6e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0276 K19600 - gmx:100794141 622.468