Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0272 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAGGGATTTTGTGGGGGCTCGTAAAATTGCACTAAAGGCTCAGCAGCTGTACCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTCTGCTGAGCAGAAATTGTTTGGTAATGAGATGGATTGGTATGAAATTCTTCAGGTTGAACAGACAGCTGGTGATGCAATGATTAAGAAGCAATATAGGAAGCTTGCTCTCCAACTTCATCCTGACAAAAATAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTGCTTTTGGACAGAGAAAAACGATCTCTTTATGACATGAAGCGTAGAGTTCCAATGAACAAACCTGCTGTGTCACGTTTTAATTCTACGGTGAGCAGCAATGTTAGGCCCAACTTTACAAGCTCAAATGCTCAGCAGCAGCAGCAATCTAGGCAGCCAGCACAGCAGCGGCAAAATGGTGGACGCCCTACGTTTTGGACGGTCTGCCCATTTTGTGCTGTTAAGTATCAATAttacaaagaaattttaaataaatctcttCGCTGTCAAAATTGCAGAAGGCCCTTTGTTGCATATGAAGTGGATATACGGGGTAAATCATCACCCGCAACTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGATGGTTTGAATCATGGTGCTTTCAAGGTGGGTGCTGGATCTCAAGGCAATTCACATGCTGAGAAGTCCAATGCTGGGCCTTATGATAAAAAAGGGCCTACTAAAGTCTCTGGAAAACCGAatggaaagagaaagaggaagcaGGTGGCAGAATCCAGTGAAAGTTCTGATTCTATGAGCAGCAGTGATTCTGAAGGAGATATGGTTTCTGGCAAGGGTGGGTTTTTTGGTGTAGAAAACCATTCAACTTTTAGAGAAGGGCATCCACGCAGATCTACGCGGAAAAAGCATCCAGTTTCCTACAAGGATAATGTGAAAGACAATGATGATGGCTTCTTGAAACCACGTGGTGATGGTGAAAATCATGGTGAGACAACTAAAATGAATGATCAGAATGGTTTAGCTGCTAATCTGAAAGATGAACATAAAGAAGTAAAACAGAAACAACACTTGTACTCTAAAGGGAGCTTAGTCAATAGAAATGAGGAAACTAAGATGGTCAGTGGAAAAGATGCAGTGGGAGGGTCAAAGCAGATGGATGAAACTTCAGAGCATTCTCCAGATTCAACCTCCAAAGCAGCAAATCATCCAAATGTTTATGTCTATCCTGATGCAGAGTTCAGTGATTTTGACAAGGACAAGAAAAAAGAGCGTTTTGCAGCTGGGCAGATTTGGGCTGTTTATGATACAACAGATGGCATGCCTAGATTCTATGCTTTAATCAGAAAAGTTCTGTCTCCTCGATTCAAGCTGCAGATAACATGGTTTGAATCACATCCGGATTCCAAGGATGAAATCAAATGGGTAAACGAGGATTTGCCTGTTGCTTGTGGGAAATATAAACTTGGTGATGCTGACATCACTGAAGATCATCTGATGTTCTCTCATCTGGTTTTGTGTGAAAAAATTAGCCGTAATACTTTCAAAGTGTATCCTAGAAAGGGAGAAACTTGGGccctttttaaaaattgggatATCAAATGGTTCATGGATGTGGAATCTCATCAGCAGCATGACTATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGGTGAGGGTGTAAATGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTAAGTCTCTTCTTTCGAAATATGAAGGAAGATAACAAATCATTTCAAATTCCACCACTGGAATTATTTAGATTCTCTCACAGGGTTCCATCTTTCAAAATGATTGGTGAGGAAGGAGTTGGCGTACCTACAGGATCTTATGAACTTGATCCTGCAGCTTTGCCAATGAATCTTGAAGAGATTGCTGTTCCTGAAAATTTAGATGTGAAGGTTGGTCATAGTTCATCTGGCGGTGAGAATACTAGGTCTTCAGATAGATCAGGACCCCCGATGACGTCTGAGGGAGATACATCCATTTCCAAGGTTAATTTGGAAAGAAGCAATTTGGCAAGTGAGAACAAGGATTCTGTTGATGACAGTGATAATTGTTGTGCTCCTCCAGCATCGAGCTCAGAAACTATTGAAATTCCAGATACccaattcttcaattttgatgcTGGGAGGTCCCTTGAAAAGTTTCAGATTGGTCAGATTTGGGCATTTTACAGTGATGAGGATGGATTGCCAAAATATTACGGTCAGATTAACAAGATTGAGACAAGGCCAGATCTTGAATTGCACGTTTCCTGGCTTACTTGTAGCTGGCTACCAGAGAATACCATTAAATGGGAAGACAGAGATATGGATGTGCTTATTTCCTGCGGCagatttaaagttaataaaacaGATGAATTTCTCAGTGTTTATAGTACCACCTCTTCTGTTTCACATCAAGTGCATGCTGATGCTGTTgttaagaacaaaaattataccATTTTTCCGAGGAAAGGTGAAGTTTGGGCGTTATATAGAAAATGGACAAAACAAATCAAATGTTCTGACTTGAAAAATTGGGAGTATGACATAGTGGAAGTTGTTGAAGAAACTGATTTGTTCATAAATGTTTTAGTTCTGGAGTTTGTTAGTGGGTTTAGTTCAGTTTTCAGGGGCAAATCAAATGGAGGATCATCTGTCAACCTAAGAATACCCAGAAAAGAGTTGCTTAGGTTCTCCCACCAAATCCCAGCTTTCAAACTGACAGAAGAACATGGTAATCTAAGAGACTTCTGGGAACTTGATCCAGGTGCGCTTCCAATTCATTATTATAGCTTGAGATGA 2910 0.3931 MDCNKEEALRAKDIAEKKMENRDFVGARKIALKAQQLYPDLENIAQMLVVCDVHCSAEQKLFGNEMDWYEILQVEQTAGDAMIKKQYRKLALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSLYDMKRRVPMNKPAVSRFNSTVSSNVRPNFTSSNAQQQQQSRQPAQQRQNGGRPTFWTVCPFCAVKYQYYKEILNKSLRCQNCRRPFVAYEVDIRGKSSPATNSTQQASDQQKDGLNHGAFKVGAGSQGNSHAEKSNAGPYDKKGPTKVSGKPNGKRKRKQVAESSESSDSMSSSDSEGDMVSGKGGFFGVENHSTFREGHPRRSTRKKHPVSYKDNVKDNDDGFLKPRGDGENHGETTKMNDQNGLAANLKDEHKEVKQKQHLYSKGSLVNRNEETKMVSGKDAVGGSKQMDETSEHSPDSTSKAANHPNVYVYPDAEFSDFDKDKKKERFAAGQIWAVYDTTDGMPRFYALIRKVLSPRFKLQITWFESHPDSKDEIKWVNEDLPVACGKYKLGDADITEDHLMFSHLVLCEKISRNTFKVYPRKGETWALFKNWDIKWFMDVESHQQHDYEFVEILTDYVEGEGVNVAYLAKLKGFVSLFFRNMKEDNKSFQIPPLELFRFSHRVPSFKMIGEEGVGVPTGSYELDPAALPMNLEEIAVPENLDVKVGHSSSGGENTRSSDRSGPPMTSEGDTSISKVNLERSNLASENKDSVDDSDNCCAPPASSSETIEIPDTQFFNFDAGRSLEKFQIGQIWAFYSDEDGLPKYYGQINKIETRPDLELHVSWLTCSWLPENTIKWEDRDMDVLISCGRFKVNKTDEFLSVYSTTSSVSHQVHADAVVKNKNYTIFPRKGEVWALYRKWTKQIKCSDLKNWEYDIVEVVEETDLFINVLVLEFVSGFSSVFRGKSNGGSSVNLRIPRKELLRFSHQIPAFKLTEEHGNLRDFWELDPGALPIHYYSLR 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0272 969 SUPERFAMILY Chaperone J-domain 63 133 IPR036869 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 677 714 - -
Ssu6g0272 969 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 967 - -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 291 305 - -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 336 363 - -
Ssu6g0272 969 CDD DnaJ 67 120 IPR001623 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 397 435 - -
Ssu6g0272 969 Coils Coil 366 386 - -
Ssu6g0272 969 Pfam Domain of unknown function (DUF3444) 735 946 IPR024593 -
Ssu6g0272 969 Pfam Domain of unknown function (DUF3444) 436 642 IPR024593 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 222 368 - -
Ssu6g0272 969 PRINTS DnaJ domain signature 87 102 IPR001623 -
Ssu6g0272 969 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu6g0272 969 PRINTS DnaJ domain signature 103 123 IPR001623 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 138 176 - -
Ssu6g0272 969 SMART dnaj_3 66 123 IPR001623 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 673 736 - -
Ssu6g0272 969 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Ssu6g0272 969 PANTHER - 1 967 - -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 139 176 - -
Ssu6g0272 969 Gene3D DnaJ domain 64 178 IPR036869 -
Ssu6g0272 969 Pfam DnaJ domain 67 128 IPR001623 -
Ssu6g0272 969 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0272 Ssu-Chr6 4306172 4309081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0272 4 217 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.616 2.29e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0272 - - gmx:100795200 1642.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0272 6 4306172 4309081 Ssu6g0272 6 4306172 4309081 ECH
Ssu6g0272 6 4306172 4309081 Ssu1g0754 1 16563835 16566753 PCT