Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0268 ATGGGAAGGTATCGAAGCCGGAGCAGAAGCTATAGCCCTCGCCGGCGAAGCAGGACCCCACCGCGCGGACGGAAGCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCATACAGAGACCGCCGCTCACCCCTTCCTTCCGGTTTGCTTGTTCGCAATCTCCCCCTCGATGCTAgGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTTCCTAAAAATTACTACACTGGTGAACCTCGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGCCGTGAAATAAGAATTGTTTTCGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGCCTTAATTCTCGAGGAAGTGGTCGATATGGAGGTGATGGTAGAAGGAGGAATCGTACTAGATCCCCACGACGCCGATATCACTCCTACTCTCGGTCTCCGTCACCAGCTAGGGATGATTCAAGGGATGGCAAGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCTAGTGGCAGGAAGTCCCCTCGTCTCAGGGAGAATGGTCGGAGTCCTAGTGACAAGAAGGATCAGACACCTAGCAGATCCGAGACTCCTAGGGGTAATGATTGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 738 0.5041 MGRYRSRSRSYSPRRRSRTPPRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLNSRGSGRYGGDGRRRNRTRSPRRRYHSYSRSPSPARDDSRDGKGRDDYYSPERSRSYSRSLSPSGRKSPRLRENGRSPSDKKDQTPSRSETPRGNDCSPSRSRSRSYSPR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0268 245 MobiDBLite consensus disorder prediction 23 41 - -
Ssu6g0268 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Ssu6g0268 245 MobiDBLite consensus disorder prediction 204 224 - -
Ssu6g0268 245 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 245 - -
Ssu6g0268 245 SUPERFAMILY RNA-binding domain, RBD 49 153 IPR035979 GO:0003676
Ssu6g0268 245 MobiDBLite consensus disorder prediction 225 245 - -
Ssu6g0268 245 SMART rrm1_1 48 121 IPR000504 GO:0003723
Ssu6g0268 245 Gene3D - 22 166 IPR012677 -
Ssu6g0268 245 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 245 - -
Ssu6g0268 245 MobiDBLite consensus disorder prediction 165 188 - -
Ssu6g0268 245 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g0268 245 MobiDBLite consensus disorder prediction 124 245 - -
Ssu6g0268 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Ssu6g0268 245 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0268 Ssu-Chr6 4253555 4259373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0268 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.75e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0268 K12900 - gmx:100788749 293.508