Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0255 ATGGGCATTGATGGAAGCTACGCCAGCAGATGCTTGGACATGAAAAATGGCACTGCTCTGAAGGAATCCAGTGGGACTTCTTTCATCTCAGAACTATTCATTGACCGCTCGGCGACGGGTGGAGTGAGAAGGGAACGGGAATGTGTGATGTGCCTTTCGGAGGAGATGTCTGTTGTATTCCTCCCGTGTGCTCATCAGGTTGTTTGCACAACGTGTAATGAGCTCCATGAGAAGCAGGGCATGCTAGATTGTCCTTCTTGCAGGAGCCCCATCCAGCAGCGTATTGCTGTGCGCTTTCCACCAACTTGA 309 0.5113 MGIDGSYASRCLDMKNGTALKESSGTSFISELFIDRSATGGVRRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMLDCPSCRSPIQQRIAVRFPPT 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0255 102 Pfam Zinc finger, C3HC4 type (RING finger) 45 93 - -
Ssu6g0255 102 ProSiteProfiles Zinc finger RING-type profile. 48 88 IPR001841 -
Ssu6g0255 102 SUPERFAMILY RING/U-box 43 95 - -
Ssu6g0255 102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 98 IPR013083 -
Ssu6g0255 102 PANTHER OS05G0141500 PROTEIN 2 99 IPR046934 -
Ssu6g0255 102 PANTHER OS05G0141500 PROTEIN 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0255 Ssu-Chr6 4086221 4086529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0255 48 97 C3H Transcription Factor Family AT1G73950 42.000 1.34e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0255 - - gmx:100775512 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0255 6 4086221 4086529 Ssu6g0255 6 4086221 4086529 ECH
Ssu6g0255 6 4086221 4086529 Ssu1g0792 1 17340036 17343469 PCT