Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0254 ATGTTCCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGGGTACTACCCTGACTCACCtgataaagaaaaccaagataGTTTTTGCATTAGTACACAAATCCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGTCAATATGGTAGCCAGTGCTCAAAGTTCGTTAAGGATAGGTTGGTAGAGAAGTTGTCAAATGATCCTGCATTGTTGGAGGACCCTGTTCAAGCTTACAATTCTGCATTCTTGGCAACGAATCAAGAATTGCGTGCTAGTGAGATTGATGATTCTATGAGTGGCACCACTGCGATTACGGTGCTTGTAATTGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCAAGAGCAGTGCTGGCTGTTAAGGATGGGAATCGCATTGTTGCTGAGGACTTGTCCTCTGATCAGACGCCATTTCGGAGAGATGAATATGAGAGAGTGAAGCTTTGTGGTGCGAGGGTGTTGAGTGTTGATCAAGTGGAAGGGCTCAAGGATCCGGATATCCAGAATTGGGGTGACGAAGAGAGTCGGGGTGGCGATCCTCCAAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCATTTACAAGGAGTATAGGGGATAGTTTGGCGGAGACTATTGGTGTCATTGCTATTCCTGAGGTGAAAACGGTTCAGCTTGCACCTAATCATCTTTTCTTTGTTGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGCCAAACTGTTGTCGATATGGCAGCAAACTATATGGATCCTCGTGATGCATGTGCAGCTATTGCAGAGAAGTCGTATAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGTCTCTCTAATTCAGGTGCATCTGGAGTTGGATCAGATGAGATCAATGTTGGTACTGTAATGAATTCCAGGACAGCAACTTCAGAGATATCTGCTACCCCTGGATCTGATGTTTATCGTTCTGTCAGGAACAGTTTCTCTGATTTGCAAACCTGTCAGTATGTGGTTTCAATGACGAGCCCAGCTGTAGAGagtttgtatttgattattaaagCAAGAGACATACAGATAGGAgataataaaatgtcaattcGCCATGAGAATTTTGGCACGATGATGATGGAACAATTTACTTGGCTAAGGTTACATccaccatcaccgctgccacaactacaaCGACCACTgacatcgccaccaccaccaccgctgccacaactaccacccatcattgctgccacaactaccacaaccaccAGCATCACCTTCACCactacaagcttcatcaccattaccattgtcaccgccaccaccacaaccacgaTCACGACTACCaacgctgctgccaccaccacaagcaatgtcaccaccaccaccactcactttaccaccaccatcaccagtggcaccgccacgatcaccacctgtaccgccacaaccactgccGTCGGCACCGCCACAATCGTCACCGtcggcattaccaccgccaccaccatcattgttgtcgtcaccactaacattATCGATCGTACTTTGATTGTTGGAAAATTGCTCCAATCGGCTAAAATGATTTCATTGGTTGCCAGTTCTAGCGGTCAAATGTCTCCTTCAGTTTCTTGCCAAGAAAAAGGAAGTAGGAACAAGAGAAAATTCAGGGCTGATCCACCTCTACGGGAGCCAAATAAGATCATTCCTGCACCTCAACTTGAGTGCCTCGGCTATGAATTCTCTGCTGAGAAGTTTGAAATAACCCCAGGTCATGGGCAAGCTGCTGCTTGTGACCTGTGTAGTGTTGGACAAGATCATTCTGATGGACTGAAGCTCGGCCTTGGATTGTATAGTCCTGGAACATCTGAGGTTGGGCCTAGTCAATCAAAGGAAGAACCTGAGACAAATGAATTTAACAATGCAGATTGGAGCGATCGCACAGAAGCCCAGTTAGAAGAACTTGTCCTAAGTAATTTGGACACCATTTTCAAgagtgcaataaaaaaaattgtagcatGTGGCTACGCCGAAGAAGTTGCTACTAATGCCATTTTAAGACCTGGCATCTGTTATGGATGTAAAGATACCGTGTCTAATATTGTTGATAATACTTTAGCATTTCTTAGAAATCGCCAAGAGATTGATACTTCACCAGAGCATTATTTTGAAGATTTAGTGCACCTTGAGAAGTATGTCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTCTTCAGTATTGGGAATGCAATGTGGTGTTTGTTAATCTGCGACATCAATGTGTCACATGCTTGTGCAATGGATGGTGACCCTTTAAGTAGTTTAGATAGTGATAATACCGCTAATGGTTGTTCAGCTAGCCAAGCAGAATCACAATCGAAAGCAGAAACCAAAGTTCCTGAATTGAGTCTTCTAAGTCCTAGTAAATCAATTCCTGCAGGTTCTCATAATTCTCAATCAAAGAAACCCTTTGTGGCTGGAATTCCTGGTGTGAACAACTTGAATTCTCAAATTATTAGTGGACCCTCAGACAATGAGGGCGCCAGTTGTGGATCTGATTGTGTTGATAAAGCATTCAGCACCACTGGAACTTCTCAATCTCCCCTGATGGAAGAAAAGTGTGGAACTGTTAGAAAGGTCCATTCTGGTAGCACCAAGAGAGACTACTTTCTTCGACAAAAGTCATTTCATGTAGAAAAAAGTTATCGTACTTACGGATCAAAAGGGTCTTCAAGAGGAGGGAAGCTTAATGGCTTGAGTGGTTTATTCTTGGATAAAAAATCTGTGTCAGAATCTTCTACCATAAACTTAAAGAGTGCCTCCTTACATATAAGCAAGGCAGTGGGAGTCAATTTGACTCAAGACAACATTAATGCTAATTTCTCATGCAATGCTGGGACTTCTACCCCAACTGCATTCAGCCTGGATTCTTCTGATGCTGTTTCTACATCAACCAATACTTCATATGCAGTACATGCAGCAAATACTATACCCTCATTCAGTAGTCCAGCTTCATTATCAGCTACCAATACTGATCTTTCTCTCTCATTGTCTTCAAAAATCAAGCCTTCTACACAACCCATCTGCTACAATAATGGGGCACCTAATAGTAGTTATATGGGGATATCATACAGTAAGTCCCTGAAGCCCCAAGATGGAAAGGATGAGATGATTTTGAAGATGGTTCCAAGGGTCCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGTCAATCAGAAGGTTATGCAAGCTGCTCGTCGGCTGAGTAAGGACAAGGCTGAGCTTCAGGCACTAAGGCAAGAGAAAGAGGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTGGAGGAAAATAGCTTGAAGAAGCTTTCTGAGATGGAAAATGCCTTGTGCAAAGTTAGTGGGCAGGTAGAGCGTGCTAATGCCACTGTCCGGAAGCTTGAGGTGGAGAAGGCTGCGTTGAGGAAAGAGATGGACGCTGCTAAGCTACGTGCTACAGAAACTGCTGCAAGCTGTCAAGAGGTCTCAACGAGGGAAAAGAAGACACAAATGAAGTTTCAGTCATGGGAAAAGCAGAAATCCTTGTTTCAGGGAGAGCTACTGATTGAAAAACGAAATTTGGCACAACTGCTGCAGGAATTAGAACAAGCTAAAATGCAGCAGGAGCAAGCTGAGGGTAGATGGCAACAGGAAGCAATGGCAAAAGAAGAGGTTCTCCTACAGGCCAGTTGTataagaaaggaaagagaaCAGATTGAGGAATCAGGAAAATCCAAGGAGGACATGGTCAAACTAAAAGCAGAGAGGAATCTGCAAAGGTACAGAGATGACATCCATAAACTTGAAAAGGAAATTGCCCAACTTAGACTGAAGACAGACTCTTCAAAATTGCTGCACTGA 3966 0.388 MFLFLPTTSFWNTLFSLSGGYYPDSPDKENQDSFCISTQIQGNPSVHFFGVYDGHGQYGSQCSKFVKDRLVEKLSNDPALLEDPVQAYNSAFLATNQELRASEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPDIQNWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVIAIPEVKTVQLAPNHLFFVVASDGIFEFLTSQTVVDMAANYMDPRDACAAIAEKSYKLWLELENRTDDITIIIVQIKGLSNSGASGVGSDEINVGTVMNSRTATSEISATPGSDVYRSVRNSFSDLQTCQYVVSMTSPAVESLYLIIKARDIQIGDNKMSIRHENFGTMMMEQFTWLRLHPPSPLPQLQRPLTSPPPPPLPQLPPIIAATTTTTTSITFTTTSFITITIVTATTTTTITTTNAAATTTSNVTTTTTHFTTTITSGTATITTCTATTTAVGTATIVTVGITTATTIIVVVTTNIIDRTLIVGKLLQSAKMISLVASSSGQMSPSVSCQEKGSRNKRKFRADPPLREPNKIIPAPQLECLGYEFSAEKFEITPGHGQAAACDLCSVGQDHSDGLKLGLGLYSPGTSEVGPSQSKEEPETNEFNNADWSDRTEAQLEELVLSNLDTIFKSAIKKIVACGYAEEVATNAILRPGICYGCKDTVSNIVDNTLAFLRNRQEIDTSPEHYFEDLVHLEKYVLAELVCVLREVRPFFSIGNAMWCLLICDINVSHACAMDGDPLSSLDSDNTANGCSASQAESQSKAETKVPELSLLSPSKSIPAGSHNSQSKKPFVAGIPGVNNLNSQIISGPSDNEGASCGSDCVDKAFSTTGTSQSPLMEEKCGTVRKVHSGSTKRDYFLRQKSFHVEKSYRTYGSKGSSRGGKLNGLSGLFLDKKSVSESSTINLKSASLHISKAVGVNLTQDNINANFSCNAGTSTPTAFSLDSSDAVSTSTNTSYAVHAANTIPSFSSPASLSATNTDLSLSLSSKIKPSTQPICYNNGAPNSSYMGISYSKSLKPQDGKDEMILKMVPRVRELQNQLQEWTEWVNQKVMQAARRLSKDKAELQALRQEKEEVERLKKEKQSLEENSLKKLSEMENALCKVSGQVERANATVRKLEVEKAALRKEMDAAKLRATETAASCQEVSTREKKTQMKFQSWEKQKSLFQGELLIEKRNLAQLLQELEQAKMQQEQAEGRWQQEAMAKEEVLLQASCIRKEREQIEESGKSKEDMVKLKAERNLQRYRDDIHKLEKEIAQLRLKTDSSKLLH 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0254 1321 MobiDBLite consensus disorder prediction 639 660 - -
Ssu6g0254 1321 ProSitePatterns PPM-type phosphatase domain signature. 48 56 IPR000222 GO:0043169
Ssu6g0254 1321 Coils Coil 1219 1253 - -
Ssu6g0254 1321 PANTHER OS05G0141500 PROTEIN 549 1319 IPR046934 -
Ssu6g0254 1321 MobiDBLite consensus disorder prediction 557 581 - -
Ssu6g0254 1321 MobiDBLite consensus disorder prediction 565 579 - -
Ssu6g0254 1321 Pfam Family of unknown function (DUF6592) 676 787 IPR046527 -
Ssu6g0254 1321 MobiDBLite consensus disorder prediction 797 819 - -
Ssu6g0254 1321 CDD PP2Cc 18 302 IPR001932 -
Ssu6g0254 1321 Gene3D - 23 304 IPR036457 -
Ssu6g0254 1321 SUPERFAMILY PP2C-like 17 304 IPR036457 -
Ssu6g0254 1321 PANTHER OS05G0141500 PROTEIN 549 1319 - -
Ssu6g0254 1321 Pfam Protein phosphatase 2C 36 280 IPR001932 -
Ssu6g0254 1321 Coils Coil 1286 1313 - -
Ssu6g0254 1321 ProSiteProfiles PPM-type phosphatase domain profile. 18 302 IPR001932 -
Ssu6g0254 1321 Coils Coil 1100 1147 - -
Ssu6g0254 1321 Coils Coil 1159 1186 - -
Ssu6g0254 1321 SMART PP2C_4 13 300 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0254 Ssu-Chr6 4072538 4086218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0254 3 307 PP2C-type Phosphatase Gene Family AT3G06270 75.244 1.77e-162 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0254 - - gsj:114420104 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0254 6 4072538 4086218 Ssu6g0254 6 4072538 4086218 ECH
Ssu6g0254 6 4072538 4086218 Ssu1g0799 1 17404960 17408149 PCT