Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0247 ATGGCCTCCTCCCCCACCCCTCCCCCAGACCCACCCGCCGCCATCCCCCTCGCCCTCCCCGCGCCGCCCTCCTCCCGGCGGCTCCCTCCGCCGTGCTGGTCCCCCGACGAAACCCTCGCCCTCATCGACGCGTACCGCGACAAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAAGAGGTCGCCGACGCCGTCTCCCACCGCTGCCCCAACGCCTCCCCTCCCAAAACCCCCGTCCAGTGCCGCCACAAAATGGAAAAACTCCGTAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCGCGATTCAACTCCTCCTGGGTCCACTTCAAGCTCATGGACTCCATGGAGAAAGGCCCCTCCCCCGTCAAACCCGAAAACGATTCCGAAAGCGACAACAACAACGATGACGACGATGACGACGATCAAGGTCTCTATCAGGAGATCAACCACAACGGCCACACCAGAAGCTTGAACAAGTTGTACCGGAACGGGTTTCCGGGTTCCGCTGGCGGCGGCGGGTTTAGGATTCGAATTCCGACCGGGATGGCTGCAGCGCAGCCTGGATCTGCCTCCAAGGTGTTTGGGAAGGTTGGGAATCAGAAATTCAGTCCCAATTTGAATCAGAACCCTAACCCTAATTTTGGgaagaagagggagagagacCCCATGGGTGAAGTGGTGTCTGCGATTAAGGTTTTGGGGGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCGAGGGAGATTGAGGCCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTTTGGAGTCGCAACAGCGGATTGTCGAGGCCTTTGCTAAGGCCGTTTCGGACAAGAAGAAGAAGGCTAAGACTGTGTTGTCACCCCAACAGCCTTGA 921 0.5787 MASSPTPPPDPPAAIPLALPAPPSSRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVSHRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWVHFKLMDSMEKGPSPVKPENDSESDNNNDDDDDDDQGLYQEINHNGHTRSLNKLYRNGFPGSAGGGGFRIRIPTGMAAAQPGSASKVFGKVGNQKFSPNLNQNPNPNFGKKRERDPMGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILESQQRIVEAFAKAVSDKKKKAKTVLSPQQP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0247 306 Gene3D - 33 98 - -
Ssu6g0247 306 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g0247 306 PANTHER TRANSCRIPTION FACTOR 3 303 - -
Ssu6g0247 306 MobiDBLite consensus disorder prediction 208 222 - -
Ssu6g0247 306 MobiDBLite consensus disorder prediction 124 155 - -
Ssu6g0247 306 ProSiteProfiles Myb-like domain profile. 33 93 IPR001005 -
Ssu6g0247 306 SMART 118neu2 40 129 IPR006578 -
Ssu6g0247 306 MobiDBLite consensus disorder prediction 208 228 - -
Ssu6g0247 306 Coils Coil 253 273 - -
Ssu6g0247 306 Coils Coil 86 106 - -
Ssu6g0247 306 Pfam Myb/SANT-like DNA-binding domain 31 124 IPR044822 -
Ssu6g0247 306 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 303 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0247 Ssu-Chr6 3969203 3970123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0247 32 124 Trihelix Transcription Factor Family AT3G14180 38.710 5.97e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu6g0247 Myb_DNA-bind_4 4.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0247 - - vun:114179736 461.84