Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0236 ATGCAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGCGAAGGGAGTAGATACAGAATAGAGGAAGTAATCGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACATACTGGAGAAAAGgttgcaataaagaaaatcaatgacATATTTGAACATGTTTCTGATGCCACCCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGTCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAagatatatatgttgtttttgaaCTTATGGAATCTGATTTACATGAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTaaagccaaaaaatattttagcaaatgCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCTAGAGTGGCTTTCAATGATACACCAACTGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTATGTGGATCCTTTTTCTCCAAGTATACCCCTGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTATTAACTGGAAAACCTCTTTTCCCGGGGAAGAATGTTGTCCATCAATTGGATCTCATGACTGATTTTCTTGGAACACCATCTCCTGAAGCCATTGCTAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCATAAGAAGAAGCCAGCTCCTTTCTCCCAAAAGTTTCCTAATGTAGATCCTCTTGCTCTTCGCGTGTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTAGAGAGAGAGCCTTCTGCTCAGCCAGTTACCAAGCtggaatttgaatttgagagaCGTAGGATAACAAAGGAAGATGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGCAGAGCCAACGGGATTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTTGAAGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCATGTGTGTTGTATTCTGATAACTCAAGACAAAATATGGCTGAGGTTGCAGATGATCTCTCCAAGTGTACCACCAAAGAAGTTGAGAAGCCAGCTGCACACAGGACTGGTGGTATCCCAATGACCAGGCTTCCTTTACAAGCTcctcaaaatattcaatgtgtGATGACTGATTGTAGCGTTGCTGCACGGCCTGGAAAAGTTGTAGGTTCAGTATTGCGTTACAACAATTGTGGGGTAGCAGTGACAGCTGAGGCTGAGCAGCGGAGGATGGGTAGAAATCCATCTGTTTCAGCCCAGCATGCAGCTCCAAGCTGTTCATATCCAAGAAGAAACCCAAGCTGTAAAAATGAGAGGGCAGAAGAGGGGATTGAAGGTGCTAATGGGCTTCAGACAAAGCCTCAATACATGGCACGAAAAGTCACTGCTGCTCAAGGGGGACCTGGTGGTAGTTGGTATTGA 1686 0.4093 MQSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHEVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMHKKKPAPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKLEFEFERRRITKEDVRELIYREILEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDNSRQNMAEVADDLSKCTTKEVEKPAAHRTGGIPMTRLPLQAPQNIQCVMTDCSVAARPGKVVGSVLRYNNCGVAVTAEAEQRRMGRNPSVSAQHAAPSCSYPRRNPSCKNERAEEGIEGANGLQTKPQYMARKVTAAQGGPGGSWY 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0236 561 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
Ssu6g0236 561 CDD STKc_TDY_MAPK 18 355 - -
Ssu6g0236 561 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0236 561 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0236 561 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Ssu6g0236 561 MobiDBLite consensus disorder prediction 499 524 - -
Ssu6g0236 561 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu6g0236 561 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
Ssu6g0236 561 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Ssu6g0236 561 MobiDBLite consensus disorder prediction 501 520 - -
Ssu6g0236 561 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0236 561 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Ssu6g0236 561 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0236 Ssu-Chr6 3790210 3794077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0236 2 561 MAP Kinase Gene Family AT5G19010 79.021 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu6g0236 Pkinase 3.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0236 - K04371 gmx:100799442 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0236 6 3790210 3794077 Ssu6g0236 6 3790210 3794077 ECH
Ssu6g0236 6 3790210 3794077 Ssu1g0825 1 18151471 18157323 PCT