Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0223 ATGGCGCAACAGGTACTCGCTACATGTCCACCTCAGTGTGTTTCGCTTCGCCGGATCGAAATTGCGAAGCCATCGAAGTGTGTCACAAAATCAAAATGTTCTACCATTCCTCCACTATCAATTTCTGCCTCTGCTCCTCTTCGCTACGCGTCGTTTTGCTGCGGCCCCAGCTCCAGCTCTTCTGTCCAATGCAATTTGCCTTCTTCAGCCAACATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCTGAAGGACGTTTGAAGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCTAGTTCAGCTTCCAATAGATAAAGAATATGGGCAGTCTTTAGGATTTGCATACATTTGGTTTGTCAAGGAAGAGTCTGCACAATTGGCTGTGCAAGAGATGAATGGAAAGGTCTGA 408 0.4632 MAQQVLATCPPQCVSLRRIEIAKPSKCVTKSKCSTIPPLSISASAPLRYASFCCGPSSSSSVQCNLPSSANIFVKGLPLSTSEGRLKKVFSEFGEVTLVQLPIDKEYGQSLGFAYIWFVKEESAQLAVQEMNGKV 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0223 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 135 IPR000504 GO:0003723
Ssu6g0223 135 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 26 134 - -
Ssu6g0223 135 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 26 134 - -
Ssu6g0223 135 SUPERFAMILY RNA-binding domain, RBD 60 134 IPR035979 GO:0003676
Ssu6g0223 135 SMART rrm1_1 71 135 IPR000504 GO:0003723
Ssu6g0223 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 134 IPR000504 GO:0003723
Ssu6g0223 135 Gene3D - 50 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0223 Ssu-Chr6 3547083 3549029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0223 70 135 Eukaryotic Initiation Factors Gene Family AT1G71770 37.879 1.13e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0223 - - ccaj:109808459 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0223 6 3547083 3549029 Ssu6g0223 6 3547083 3549029 ECH